﻿WEBVTT

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Hi, my name is

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Lauren
Pearson and I am a laboratory director

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for University of Utah Health and AARP
laboratories.

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It's my pleasure to present my thoughts

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about method validation
and verification to you today.

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We'll go through some of the basics

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and apply the concepts that we learned

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as we go with some interesting
laboratory challenges.

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So the objectives of today's

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didactic are the following.

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To identify the difference between method
validation and method verification.

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To describe the studies
required to document method performance

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and to interpret method performance data.

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So we'll start

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with some context and definitions,
as well as an overview

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of the regulatory
requirements in this area.

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As we'll spend the bulk of our time
talking about the different studies

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required for assay
verification or validation.

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So right off the bat
let's talk about the difference

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between the terms validation
and verification.

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Often in the laboratory
we use these terms interchangeably.

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But if you go back to the books,
validation is really a process

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by which you establish the performance
specifications of a new diagnostic tool.

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So that could be a new instrument.

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It could be a new assay.

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It could be a laboratory developed test
that you're inventing

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something
that's being created for the first time.

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Or it could be a diagnostic tool
that you have modified in some way.

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Contrast that with verification,

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which is really a one time process
to determine

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how well a tool performs

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before it gets used for patient testing
with verification.

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Typically, what laboratories are doing
is they're taking an FDA

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cleared or FDA approved diagnostic tool

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and they're performing
some initial studies on it

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just to verify
that what they've been told by

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the manufacturer is true.

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Before testing patient samples.

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In general, the process
of completing a full validation,

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which is typically what an instrument
or assay manufacturer does

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before marketing a device, is

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much, much more labor intensive.

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There are more studies required

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and we will get into the differences
as we go.

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Once we get into the heart
of the various studies

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that are required
to document method performance.

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So why do we

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evaluate a new method or a new tool?

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Well, let's start with the obvious one.

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It's required and we'll get into
the details of that in the coming slides.

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We are required by clear

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as well as by other accrediting agencies
to document

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method performance before patient testing.

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But there's other reasons
to evaluate a method as well.

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So for example,
as part of the normal quality assurance

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to ensure high quality results

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are being reported by the laboratory.

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It's also very useful
to have some documentation

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about how the tool performed,

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in case you end up having to troubleshoot

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possible analytical errors down the road,

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and you want to go back
to your original verification study

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to determine if there has been drift
in the performance of

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the assay or the instrument.

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And then

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for clinical consultations,
that can be quite helpful.

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So for example,
if you get a call from a clinician saying

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yesterday
my patient had a sodium result of 153

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and today their result is 154.

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Is this a clinically meaningful
difference?

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Your understanding of how the assay
or the instrument performs can help

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you answer those types of questions
in a meaningful way.

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So let's talk about the laboratory
regulations.

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In general,
these regulations are very vague

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and they are open to interpretation.

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So they direct what must be done.

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But they don't tell you how to do that.

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And that's because it's hard to generate
a one size fits

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all prescriptive approach
to evaluating a new diagnostic tool.

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So while it may be a headache
for a director,

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because now the onus is on us to decide
how to accomplish it.

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It also benefits you as a laboratory,
and to have a little bit of flexibility

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into how you're going
to meet the requirements,

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as well as in your evaluation
of whether a diagnostic tool

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is acceptable
and in its performance for patients.

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So let's

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briefly
talk about how tests are categorized.

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This may seem a little out of place
in the context of the presentation,

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but it's important to understand because

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most of the discussion in this area
is going

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to focus on requirements
for non waived testing.

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And I just briefly wanted to define

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waived versus non waived testing and talk
only for a moment

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about how to meet the requirements
for waived testing.

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So test categorization

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or test complexity is another term
that could be used

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is determined during premarket approval

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with the FDA

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and waive testing in

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general is testing that is approved

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for either home and or point of care use.

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And in the literature,

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you'll see terminology
that waive testing in general has a low

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risk of patient mismanagement if it's
even if it's performed incorrectly.

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I personally think

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that there is, some risk of patient

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mismanagement with waived testing,
but that's just my opinion.

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Non waive testing encompasses moderate
complexity and high complexity testing.

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An example of a high complexity
test is a laboratory

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developed test
for body fluid chemistry testing.

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For example modified test.

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That last bullet point
there, really refers to a situation

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where a laboratory modifies

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an instrument or an assay

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in such a way that it becomes

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higher complexity, according to Clea,

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and would therefore require more thorough

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evaluation
before patient testing commences.

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So big picture here.

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Very huge difference
in terms of complexity

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between waived and non waived testing.

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As I mentioned,

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the rest of this is going to be very much

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directed at the requirements
for non waived testing.

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But briefly

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regarding waived tests,
at least according to clear,

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there's only three requirements
that laboratories must meet.

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You have to pay a biennial fee
for a clear certificate,

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follow the manufacturer's instructions
for use

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and allow the lab to be inspected.

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And you'll notice
that there's really no method

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evaluation required,
according to Clea for waive tests.

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Now, if you're Cap accredited,

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there is a whole checklist of

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requirements that apply to waive testing
that must be followed.

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And I would argue that,

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you know, the laboratory

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should go through some process

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of evaluating the method performance
of waived tests

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because it's the best and the safest thing
to do for patient care.

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So in my laboratory,
we always make some effort

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to verify the performance of the tool
before we use it on patients.

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Even though Clea may not
explicitly require us to do much.

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Okay.

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Switching gears to non waive testing.

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So what does Clea say
about method validation in this area?

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Well, Clea tells us what to do depending

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on the categorization

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of the test in question.

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So for example
if the test or the assay is moderate

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complexity,
Clea says we have to evaluate for things

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accuracy, precision,

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reportable
range and rapid reference range.

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And I like this little mnemonic

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that I've indicated on the screen.

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Compare that to the requirements

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for high complexity testing
which are more numerous.

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So in addition to the four
that are required for moderate complexity,

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you're also required to make an evaluation

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for analytical sensitivity
and analytical specificity.

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You'll also want to be sure

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that the calibration
and control procedures

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and other performance criteria
are considered

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before commencing patient
testing for a high complexity assay,

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especially
if it's a laboratory developed test.

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So we will

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go through these studies

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in this presentation.

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But remember at a minimum

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precision accuracy recordable

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range and reference range.

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So I mentioned briefly

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before the concept of test modifications.

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Why does it matter.

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The reason it matters
is that any time you change

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something about a tool, it could affect
the performance of that tool.

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And that's important because
it will affect patients potentially.

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So that's why in the requirements

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you are required

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to verify that that change has not
had an adverse effect

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on the diagnostic capability of the tool.

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So if I modify

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a moderate complexity,

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FDA approved assay in any meaningful way,

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that tool
now is considered a high complexity tool.

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And I need to have the validation studies

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to back it up
before testing patient specimens.

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So what are some examples
of test modifications?

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There's a very vast list.

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But just to highlight
some of the more common ones.

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So for example modifying the assay

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to test a different sample matrix.

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You know, let's say you took a serum assay
and now you want to test urine using

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that assay, promoting a different clinical
application,

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screening versus diagnosis.

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The type of analysis.

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So if you took something
that was meant to be qualitative

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and you started to quantitate something,

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you changed an incubation
time, a temperature,

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step in the standard operating procedure,

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diluting samples, reagents

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using a different calibration, etc.

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these are all things that one should

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verify aren't going to adversely affect

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the diagnostic performance of the tool.

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So here's the meat of what I've been

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saying thus far.

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Basically, laboratories are required

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to perform analytical validation.

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Verification of each
non waived test method

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or instrument
before beginning patient testing.

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And this does

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include any loaner
or temporary instruments.

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Let's say your device breaks
and the manufacturer sends you a loaner

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that you're going to have
for a couple weeks

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while they figure out
what's wrong with your device.

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You have to verify

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the performance of that loaner
before you can test

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patients using it.

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And it's really important to retain
records of everything that you do.

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That is also a clear requirement.

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So just wanted to point that out.

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So how do we meet the regulations.

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As I mentioned earlier

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they're not very prescriptive.

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How to do that.

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There is no single correct way
to accomplish this stuff.

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But as a medical director, I often

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look to consensus protocols

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to the literature.

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It's great when other laboratories

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publish their verification or validation
studies.

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I always enlist,
the recommendations of the manufacturer.

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Ultimately, it is a balance

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between cost
and other operational considerations.

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The amount of time and resources
that your laboratory

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has to invest in the process.

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So we're going to dive
right into the various studies

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that are required to document
method performance.

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And I'm going to teach you,

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you know, best practice
based on consensus.

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And I'm also going to show you an example

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of an assay that we

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did a verification study
for in my laboratory and ended up

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publishing in one of the laboratory
medicine journals.

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That nicely illustrates
some of these concepts.

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So let's start with accuracy.

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Right.

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So this is the first of the four
required studies

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for a moderate complexity tool.

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So how do we define accuracy.

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What is it in this context.

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So accuracy is a measure of bias

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and typically bias
to some reference method.

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Now in my world where I'm primarily

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working with FDA approved tools,

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usually bias in that context
is relative bias,

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meaning it's biased
relative to the existing tool that I have.

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Perhaps I'm looking to replace one assay,

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with an updated,

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newer version of that same assay,
for example.

00:16:37.266 --> 00:16:41.700
Or I'm replacing the latest version
of an instrument with,

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a model of that instrument
that is being sunsetting.

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So that would be relative
bias between two tools,

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keeping in mind that in that situation,

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both tools can have error.

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So we may not always know
which one is totally right.

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Then there's absolute bias,

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which would be bias of the tool
that you're evaluating

00:17:12.066 --> 00:17:16.100
against some gold standard
or reference method.

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That would be the definitive measure
of truth

00:17:19.866 --> 00:17:23.400
in terms of quantification and recovery

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of whatever it is
that you're trying to measure.

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Most laboratories aren't able to,

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conduct
an accuracy study against, you know, the

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the true reference method
for a particular test, but many do.

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How do you conduct an accuracy study?

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Well, you design a method comparison.

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And as I mentioned in the previous,

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slide,
you want to be really careful what tool

00:17:55.133 --> 00:17:59.000
you compare your new assay
or your new instrument against,

00:17:59.966 --> 00:18:02.566
because both tools are

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or can be subject
to some measurement error.

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It's nice if you can choose a tool
that is known to be operating

00:18:11.700 --> 00:18:15.033
as expected and operating stably

00:18:15.600 --> 00:18:18.600
for your method comparison study.

00:18:19.666 --> 00:18:20.966
The other really important

00:18:20.966 --> 00:18:23.966
consideration is the sample quality.

00:18:24.200 --> 00:18:28.000
So you're going to analyze
a minimum of 40 specimens

00:18:28.333 --> 00:18:33.533
by both the test meaning the new tool
and the reference method,

00:18:34.500 --> 00:18:36.766
preferably in duplicate over

00:18:36.766 --> 00:18:39.766
a period of many days. Now.

00:18:42.066 --> 00:18:45.066
What do you select for your specimens?

00:18:45.300 --> 00:18:48.600
It's obviously best to select specimens

00:18:48.600 --> 00:18:53.733
that are of the same matrix
as patient samples.

00:18:55.166 --> 00:18:58.900
And there are some challenges
inherent in that.

00:18:59.266 --> 00:19:02.900
So we all know that patient samples

00:19:04.066 --> 00:19:08.066
sometimes
are not of sufficiently high quality.

00:19:08.366 --> 00:19:12.333
For example, it's
not uncommon for laboratories to receive

00:19:12.600 --> 00:19:15.600
patient samples
that have a low level of hemolysis

00:19:15.933 --> 00:19:19.633
or some other interfering substance
that, affects

00:19:20.166 --> 00:19:23.166
the ability of the tool to measure

00:19:23.400 --> 00:19:25.566
the analyte of interest.

00:19:25.566 --> 00:19:28.766
So when you're doing a method
comparison study,

00:19:29.333 --> 00:19:32.333
you want to make sure
that whatever samples

00:19:32.666 --> 00:19:35.533
you procure for the method comparison

00:19:35.533 --> 00:19:40.200
are of high quality,
that are free or as free as possible

00:19:40.200 --> 00:19:44.200
from, substances
that can interfere with the measurement.

00:19:45.900 --> 00:19:48.066
It's also optimal

00:19:48.066 --> 00:19:53.533
if you curate samples for the study
that covers a very wide

00:19:53.533 --> 00:19:57.433
range of analyte concentration,
because you'd like to be able

00:19:57.433 --> 00:20:00.833
to understand
how accurate your new tool is,

00:20:01.900 --> 00:20:03.933
both at high

00:20:03.933 --> 00:20:06.933
concentrations of the analyte
as well as low

00:20:08.133 --> 00:20:11.600
and we'll talk about this

00:20:11.600 --> 00:20:14.600
in a little bit more detail
with an example coming up.

00:20:15.333 --> 00:20:21.066
But I always find that it's it's
very important to have a robust number

00:20:21.066 --> 00:20:24.066
of samples clustered around any

00:20:24.066 --> 00:20:27.200
clinically significant points of interest.

00:20:27.400 --> 00:20:30.300
Stay tuned on that point.

00:20:30.300 --> 00:20:32.666
Okay, so back to the drawing board.

00:20:32.666 --> 00:20:37.200
You're going to take a minimum
of 40 specimens, preferably of the matrix

00:20:37.333 --> 00:20:40.333
that you will be testing for patients,

00:20:41.066 --> 00:20:43.300
spanning over the measurement

00:20:43.300 --> 00:20:48.000
range of the tool
and of high quality and within stability.

00:20:48.000 --> 00:20:48.900
That's another,

00:20:49.833 --> 00:20:52.833
thing that can be important.

00:20:53.000 --> 00:20:56.000
So now at the end of this study,

00:20:56.000 --> 00:20:59.000
you have got an Excel spreadsheet

00:20:59.033 --> 00:21:02.133
that, lists a result for each specimen,

00:21:02.833 --> 00:21:06.833
for your existing method
or your reference method quote.

00:21:07.233 --> 00:21:10.233
And your new tool or your test method,

00:21:10.266 --> 00:21:14.200
and you're going to perform
a statistical analysis.

00:21:15.000 --> 00:21:18.300
Typically you'll make
a scatterplot of the data and you'll

00:21:18.466 --> 00:21:22.200
calculate regression
statistics and estimate bias.

00:21:23.166 --> 00:21:23.600
Okay.

00:21:23.600 --> 00:21:26.600
So now you've got some stats
in front of you.

00:21:26.800 --> 00:21:29.600
How do you determine acceptability.

00:21:29.600 --> 00:21:32.600
Typically we compare the results

00:21:32.600 --> 00:21:36.900
with internal criteria
to judge acceptability

00:21:37.033 --> 00:21:40.366
or manufacturers claims for accuracy

00:21:41.666 --> 00:21:42.533
for more detail.

00:21:42.533 --> 00:21:46.033
So there's a nice consensus document Klci

00:21:46.033 --> 00:21:49.033
Ep9 that can be referenced.

00:21:49.233 --> 00:21:52.233
So let's look at an example.

00:21:52.433 --> 00:21:55.366
This is a study that

00:21:55.366 --> 00:21:57.600
my laboratory published in

00:21:58.800 --> 00:22:01.233
a laboratory medicine journal.

00:22:01.233 --> 00:22:04.233
It was a validation study

00:22:04.400 --> 00:22:07.400
for a new pro calcitonin assay.

00:22:08.033 --> 00:22:11.100
At the time,
our laboratory had the gold standard

00:22:11.100 --> 00:22:14.866
method,
which was on the crypto instrument.

00:22:15.366 --> 00:22:19.266
And we were looking to replace the crypto

00:22:19.500 --> 00:22:22.500
with the,

00:22:22.766 --> 00:22:25.533
method offered by our,

00:22:25.533 --> 00:22:29.500
vendor who supplies our
our automated chemistry assays.

00:22:30.766 --> 00:22:32.966
So what did we do

00:22:32.966 --> 00:22:34.500
for this particular study?

00:22:34.500 --> 00:22:37.500
We analyzed 192

00:22:38.000 --> 00:22:39.733
patient specimens.

00:22:39.733 --> 00:22:42.733
And these specimens were in the,

00:22:44.800 --> 00:22:46.133
collection container

00:22:46.133 --> 00:22:50.066
that is deemed to be acceptable
for both assays.

00:22:50.100 --> 00:22:52.800
So that was the plasma separator tube.

00:22:52.800 --> 00:22:55.200
And serum separator tube.

00:22:55.200 --> 00:22:58.166
And these samples

00:22:58.166 --> 00:23:02.433
were collected and analyzed over
a period of months, encompassing

00:23:02.466 --> 00:23:05.833
two lots of reagent
and two lots of calibrator.

00:23:06.800 --> 00:23:09.766
So what you're looking at here
is the scatter plot of those results.

00:23:12.400 --> 00:23:13.300
And when I

00:23:13.300 --> 00:23:17.100
look at method comparison data
and in particular

00:23:17.100 --> 00:23:20.966
the scatter plot,
I'm typically looking at a few things.

00:23:21.300 --> 00:23:24.433
The first is what is the overall spread

00:23:24.433 --> 00:23:27.433
or dispersion of the points

00:23:27.600 --> 00:23:32.266
around the identity line,
which is the 1 to 1 line.

00:23:32.833 --> 00:23:36.266
So if all the points are on top of that
1 to 1 line,

00:23:36.266 --> 00:23:39.266
which is the gray one at the 45 degree
angle,

00:23:39.833 --> 00:23:42.000
they're all clustered
right on top of that line.

00:23:42.000 --> 00:23:45.266
That indicates a perfect correlation
between the two methods.

00:23:45.266 --> 00:23:48.000
And that's like a medical director stream.

00:23:48.000 --> 00:23:49.300
But that rarely happens.

00:23:49.300 --> 00:23:52.300
Typically you will see some dispersion

00:23:52.633 --> 00:23:55.200
around that identity line.

00:23:55.200 --> 00:23:58.200
Then I'm looking for the spread of points,

00:23:58.866 --> 00:24:00.633
to indicate the overall range

00:24:00.633 --> 00:24:05.666
of analyte concentrations
that we challenge the new tool with.

00:24:06.966 --> 00:24:09.300
And then the red dotted line

00:24:09.300 --> 00:24:13.000
is the passing linear regression.

00:24:14.600 --> 00:24:16.900
So going back to the example
that's in front of you,

00:24:16.900 --> 00:24:20.166
I see that we have lots of samples.

00:24:21.233 --> 00:24:24.466
And they do appear to be spread out

00:24:24.466 --> 00:24:28.066
pretty nicely over
a large range of target concentration.

00:24:28.500 --> 00:24:31.300
I noticed that at the low end,
there's many,

00:24:31.300 --> 00:24:34.300
many more samples clustered there.

00:24:34.500 --> 00:24:37.700
And there does appear to be overall

00:24:37.833 --> 00:24:41.100
a negative bias between the two tools.

00:24:41.100 --> 00:24:43.933
And we'll talk about that in more detail.

00:24:43.933 --> 00:24:47.466
Now the regression
statistics are listed in that box.

00:24:48.066 --> 00:24:51.900
So passing that Loc regression

00:24:51.900 --> 00:24:58.100
gives us a slope of 0.834
and an intercept of -0.013.

00:24:59.800 --> 00:25:02.200
And that will become important
in a moment.

00:25:02.200 --> 00:25:05.666
So in the ideal world, you'd like it
if your slope was one

00:25:06.066 --> 00:25:08.000
and your intercept is zero.

00:25:08.000 --> 00:25:10.500
So the slope is an assessment of your

00:25:11.800 --> 00:25:13.433
proportional bias.

00:25:13.433 --> 00:25:17.200
And then
the intercept is your constant bias.

00:25:19.566 --> 00:25:22.400
So looking at those regression statistics

00:25:22.400 --> 00:25:25.800
it supports
the picture that I'm seeing in the scatter

00:25:25.800 --> 00:25:28.800
plot graph.

00:25:29.100 --> 00:25:31.366
So let's talk for a second.

00:25:31.366 --> 00:25:34.166
I mentioned being strategic

00:25:34.166 --> 00:25:37.166
with how you curate samples
for your method comparison.

00:25:37.900 --> 00:25:40.933
I like to make sure
that I have lots of samples

00:25:40.933 --> 00:25:45.033
around medical decision points
or clinically relevant cutoffs.

00:25:46.566 --> 00:25:49.300
Sometimes it isn't always possible

00:25:49.300 --> 00:25:53.466
to obtain samples around those values,

00:25:53.633 --> 00:25:56.700
but if it's at all possible,
I highly advise it.

00:25:58.133 --> 00:26:01.700
Going back to our example of the pro
calcitonin assay.

00:26:02.133 --> 00:26:05.533
There are two medically relevant cutoffs

00:26:05.966 --> 00:26:08.966
at the low end of the measurement range.

00:26:09.500 --> 00:26:13.866
So we strategically designed
our method comparison study

00:26:14.833 --> 00:26:18.900
to cluster samples
around those decision points to determine

00:26:19.566 --> 00:26:22.566
how great of the correlation

00:26:22.800 --> 00:26:25.800
was between the crypto
assay and the new tool.

00:26:27.200 --> 00:26:30.933
And what we discovered is that in panel A,

00:26:32.200 --> 00:26:34.866
when we

00:26:34.866 --> 00:26:37.966
limit the scatter plot

00:26:37.966 --> 00:26:40.966
and the regression statistics

00:26:41.700 --> 00:26:47.000
to samples with a pro
calcitonin target concentration

00:26:47.000 --> 00:26:50.000
between 0 and 3 nanograms per ML,

00:26:50.633 --> 00:26:53.333
that the negative bias

00:26:53.333 --> 00:26:56.333
becomes much more evident

00:26:56.866 --> 00:26:59.866
than if you were to not

00:27:00.400 --> 00:27:03.600
narrow the, data

00:27:04.200 --> 00:27:07.600
for your statistical analysis
to that lower end.

00:27:09.900 --> 00:27:14.700
So what we saw is that the slope is 0.792

00:27:14.700 --> 00:27:18.166
and the intercept -0.008.

00:27:22.733 --> 00:27:25.100
We also put together a table

00:27:25.100 --> 00:27:28.666
showing agreement between the two tools at

00:27:30.466 --> 00:27:33.500
certain points in the measurement range.

00:27:33.500 --> 00:27:38.700
So at 0.10.250.5 and two nanograms per ML.

00:27:39.233 --> 00:27:42.100
So for this assay the important cutoffs

00:27:42.100 --> 00:27:45.100
are 0.5 and two.

00:27:45.133 --> 00:27:47.733
So looking at

00:27:47.733 --> 00:27:52.500
for this discussion I'll just go over the
the latter two that I mentioned.

00:27:52.833 --> 00:27:57.600
Looking at the positive agreement
between the crypt door,

00:27:57.966 --> 00:28:01.800
which remember was the gold standard
at the time versus the new tool

00:28:02.400 --> 00:28:06.000
at the cutoff of 0.5 nanogram per ML.

00:28:06.500 --> 00:28:10.533
The positive agreement was only 78.9%

00:28:12.400 --> 00:28:14.666
at two nanogram per ML.

00:28:14.666 --> 00:28:17.666
It was 42.9%.

00:28:18.733 --> 00:28:23.166
So let's step back into the context

00:28:24.266 --> 00:28:26.733
for the clinicians.

00:28:26.733 --> 00:28:30.000
So what this would mean
is that with the new tool,

00:28:30.866 --> 00:28:33.866
we would be.

00:28:34.133 --> 00:28:35.100
Having a difference

00:28:35.100 --> 00:28:40.300
of classification
for patients around these two cutoffs

00:28:40.900 --> 00:28:43.833
compared to the old method.

00:28:43.833 --> 00:28:46.500
So it's really up to you
as the medical director

00:28:46.500 --> 00:28:49.500
to decide how big of a deal that is.

00:28:49.800 --> 00:28:52.800
At the time
we thought it was very interesting.

00:28:52.800 --> 00:28:56.300
And these cutoffs are used for determining

00:28:57.133 --> 00:29:00.133
risk for severe sepsis.

00:29:00.366 --> 00:29:03.166
And also they're used for,

00:29:03.166 --> 00:29:06.266
consideration for antibiotic stewardship,

00:29:07.400 --> 00:29:09.900
for lower respiratory tract infections.

00:29:09.900 --> 00:29:12.900
So we were concerned about this
negative bias.

00:29:13.333 --> 00:29:16.833
And purportedly lower positive agreement
at the low

00:29:16.833 --> 00:29:19.833
end around those cutoffs.

00:29:21.166 --> 00:29:24.166
There are other situations where

00:29:25.000 --> 00:29:26.466
these type of data

00:29:26.466 --> 00:29:30.566
would be more worrisome
or potentially less worrisome,

00:29:30.566 --> 00:29:35.033
again, depending on what type of assay
you're evaluating

00:29:35.666 --> 00:29:38.233
and how much weight is placed

00:29:38.233 --> 00:29:41.233
on the result of that particular assay

00:29:41.366 --> 00:29:44.533
for medical diagnosis or treatment.

00:29:46.466 --> 00:29:47.733
But what's interesting is

00:29:47.733 --> 00:29:50.733
that you go back to the overall

00:29:51.133 --> 00:29:54.700
method comparison data,
and you go, but wait,

00:29:54.900 --> 00:29:57.900
when you look at the whole data
set, things look better.

00:29:59.033 --> 00:30:02.266
And that's
because in my experience, at least,

00:30:04.133 --> 00:30:07.133
the new tool has bias. But,

00:30:07.833 --> 00:30:09.500
when you're

00:30:09.500 --> 00:30:13.333
evaluating the high end of a measurement
range compared to the low,

00:30:13.633 --> 00:30:18.200
that bias may not be, equivalent
across the measurement range.

00:30:18.666 --> 00:30:21.566
So I think that this

00:30:21.566 --> 00:30:26.100
example highlights a few of the
take home points about accuracy.

00:30:26.300 --> 00:30:28.200
Really well.

00:30:28.200 --> 00:30:31.200
And I'm going to flip
back to my previous slide about this.

00:30:32.433 --> 00:30:35.433
So the take home points are

00:30:35.866 --> 00:30:38.166
make sure that you are selecting

00:30:38.166 --> 00:30:41.500
a sufficient quantity of specimens
for your method.

00:30:41.500 --> 00:30:43.500
Comparison.

00:30:43.500 --> 00:30:48.000
And make sure that you are
selecting specimens that,

00:30:48.600 --> 00:30:52.200
if at all possible, spanned
the measurement range for your tool.

00:30:53.133 --> 00:30:55.466
And then never forget

00:30:55.466 --> 00:30:58.766
an assessment
around the medical decision points.

00:31:00.466 --> 00:31:01.033
And this pro

00:31:01.033 --> 00:31:05.266
calcitonin case study does a nice job
of highlighting that latter point

00:31:05.266 --> 00:31:08.566
and showing the value of a really thorough
method

00:31:08.566 --> 00:31:11.566
comparison.

00:31:14.166 --> 00:31:15.133
Okay,

00:31:15.133 --> 00:31:19.533
so on to the second study,
which is an assessment for precision.

00:31:20.633 --> 00:31:23.066
There's different types of precision.

00:31:23.066 --> 00:31:27.000
There's the within run or intra
assay precision

00:31:27.800 --> 00:31:33.866
between run precision
and date day to day or total precision.

00:31:33.866 --> 00:31:39.333
And we're going to focus on the intra
assay or total precision

00:31:39.333 --> 00:31:42.333
for the purpose of this presentation.

00:31:44.166 --> 00:31:47.500
So we make an assessment
for the precision of a new tool

00:31:47.500 --> 00:31:50.500
by conducting precision study.

00:31:51.366 --> 00:31:53.900
So again
just as with the method comparison

00:31:53.900 --> 00:31:57.533
it's really important that you select
appropriate material for this.

00:31:58.166 --> 00:32:00.233
And you have some options.

00:32:00.233 --> 00:32:02.500
So option one is to take

00:32:02.500 --> 00:32:05.500
patient samples and analyze them.

00:32:06.300 --> 00:32:09.000
Many replicates over time.

00:32:09.000 --> 00:32:12.566
Option two is to analyze commercially

00:32:13.766 --> 00:32:16.200
available material,

00:32:16.200 --> 00:32:19.200
and which to choose is going

00:32:19.200 --> 00:32:22.433
to depend on the stability
of what you're trying to measure.

00:32:23.066 --> 00:32:26.066
So for example, in my laboratory

00:32:26.566 --> 00:32:31.133
we have a handful of analytes
where the patient samples

00:32:31.133 --> 00:32:35.933
would just not be stable enough
to complete out the full precision study.

00:32:37.033 --> 00:32:39.900
So typically what we do is

00:32:39.900 --> 00:32:43.933
we select an appropriate quality
control material

00:32:45.100 --> 00:32:49.700
to conduct our precision study
or I guess option three.

00:32:49.700 --> 00:32:51.800
And we've done this as well is you.

00:32:51.800 --> 00:32:54.900
You combine the two options and include

00:32:54.900 --> 00:32:57.900
some patient samples as well

00:32:57.900 --> 00:33:00.566
in your study design.

00:33:00.566 --> 00:33:03.566
So if you've got an FDA

00:33:03.933 --> 00:33:07.666
approved assay
that you are looking to evaluate

00:33:08.366 --> 00:33:11.566
and you haven't modified
that diagnostic tool in any way

00:33:12.133 --> 00:33:16.500
according to clear, you just have to do
a verification study for precision,

00:33:16.500 --> 00:33:21.066
which is an abbreviated option
compared to a full precision study.

00:33:22.066 --> 00:33:22.700
So that's

00:33:22.700 --> 00:33:25.800
typically
called the five by five study design.

00:33:26.633 --> 00:33:29.633
So you can do five replicates

00:33:29.800 --> 00:33:32.800
per day over five days.

00:33:34.233 --> 00:33:37.433
Or you do five measurements
and duplicate it.

00:33:37.433 --> 00:33:38.866
Or you do five measurements.

00:33:38.866 --> 00:33:40.500
Two runs a day over five days.

00:33:40.500 --> 00:33:42.566
But the idea being

00:33:42.566 --> 00:33:45.933
you're going to do some replicates
each day for a total of five days.

00:33:46.633 --> 00:33:49.500
In contrast, a full precision study

00:33:49.500 --> 00:33:53.566
would be more on the level
of what a manufacturer would do

00:33:54.200 --> 00:33:57.633
for their validation exercise.

00:33:58.233 --> 00:34:02.300
This is also the approach I would take
if I had a modified FDA

00:34:02.300 --> 00:34:06.600
approved assay, or a laboratory
developed test that I'm evaluating.

00:34:07.766 --> 00:34:10.533
So for a full precision study,

00:34:10.533 --> 00:34:13.000
you're going to get your within

00:34:13.000 --> 00:34:17.566
run precision
by performing 20 consecutive replicates

00:34:17.566 --> 00:34:21.500
per sample in a single run,
and your total precision

00:34:22.133 --> 00:34:25.133
two replicates per concentration level

00:34:25.233 --> 00:34:28.633
per run, two runs a day over 20 days.

00:34:29.733 --> 00:34:31.833
So the difference ends up being a five day

00:34:31.833 --> 00:34:34.833
study design versus a 20 day study design.

00:34:35.700 --> 00:34:39.766
You get a lot more information
out of the full precision study.

00:34:39.766 --> 00:34:42.300
But remember, there's no free lunch.

00:34:42.300 --> 00:34:45.500
This is very time consuming.

00:34:45.533 --> 00:34:50.766
You've got tech time,
you've got the cost of the materials, etc.

00:34:52.133 --> 00:34:54.866
so it ends up being a balance

00:34:54.866 --> 00:34:56.400
for your data analysis.

00:34:56.400 --> 00:34:59.833
You're going to calculate the mean
standard deviation and coefficient

00:34:59.833 --> 00:35:01.200
of variation.

00:35:01.200 --> 00:35:05.266
And then you're going
to compare the results with claims

00:35:05.266 --> 00:35:08.266
from the manufacturer or internal criteria

00:35:08.266 --> 00:35:11.266
to judge acceptability.

00:35:12.233 --> 00:35:15.233
So going back to that pro calcitonin assay

00:35:15.600 --> 00:35:17.133
how did we do this.

00:35:17.133 --> 00:35:22.600
What we did is
we took three levels of control material.

00:35:22.600 --> 00:35:25.033
And by level I mean

00:35:25.033 --> 00:35:31.100
QC material that had differing target
concentrations of pro calcitonin.

00:35:32.233 --> 00:35:35.300
We ran those
twice per day in duplicate for 20 days.

00:35:35.566 --> 00:35:37.266
So we were a little bit more thorough

00:35:37.266 --> 00:35:40.266
with our precision study
than we absolutely had to be.

00:35:41.500 --> 00:35:43.966
And these were the results.

00:35:43.966 --> 00:35:46.966
So you're going to see
for each level of QC

00:35:47.466 --> 00:35:51.266
what the mean recovery was,
what was the standard deviation.

00:35:51.266 --> 00:35:55.833
And CV for within the same run
and the same for total precision.

00:35:57.133 --> 00:35:59.800
So for example

00:35:59.800 --> 00:36:03.300
for the low target concentration
quality control material

00:36:03.633 --> 00:36:08.233
it was 2.9% CV and 3.4%.

00:36:08.266 --> 00:36:11.266
And then we compared these to the package
insert

00:36:11.366 --> 00:36:15.033
given to us
by the manufacturer of the assay.

00:36:15.600 --> 00:36:19.400
And these results exceeded the criteria.

00:36:19.400 --> 00:36:22.400
So looked great.

00:36:25.533 --> 00:36:25.900
I'll just

00:36:25.900 --> 00:36:29.033
briefly mention
regarding acceptability criteria.

00:36:29.300 --> 00:36:32.400
Sometimes you've got one day

00:36:32.800 --> 00:36:37.233
in your study where the instrument
was a little less precise,

00:36:37.666 --> 00:36:42.600
and that sort of affects
the data analysis such that your,

00:36:43.766 --> 00:36:46.600
either within run or total precision

00:36:46.600 --> 00:36:49.533
is higher than what was expected.

00:36:49.533 --> 00:36:53.533
That's the downside of doing
just a five day precision study, is that

00:36:54.100 --> 00:36:57.100
you'll be a little bit
more prone to days like that, where you're

00:36:57.200 --> 00:37:00.500
considered somewhat of an outlier
in terms of the precision.

00:37:01.500 --> 00:37:04.933
So your options at that point
are to repeat the study.

00:37:05.833 --> 00:37:09.100
Or you can embark on that longer
precision study

00:37:09.100 --> 00:37:12.100
that I described in a previous slide.

00:37:13.100 --> 00:37:16.100
However, you know, from occasionally,

00:37:16.400 --> 00:37:19.433
you just can't get the percent CV

00:37:20.066 --> 00:37:23.533
to come
within the specification of the tool.

00:37:23.966 --> 00:37:26.966
And at that point you have to decide,

00:37:27.566 --> 00:37:29.333
does it matter?

00:37:29.333 --> 00:37:32.333
Obviously, you want to eliminate

00:37:32.766 --> 00:37:36.033
or troubleshoot
what could be causing that.

00:37:36.766 --> 00:37:39.766
But if you exhaust all possibility

00:37:40.166 --> 00:37:43.400
and you're not able to identify a cause,
you really have to come back to

00:37:43.400 --> 00:37:46.700
the question of
is the precision clinically acceptable?

00:37:49.400 --> 00:37:50.400
Precision data are

00:37:50.400 --> 00:37:53.400
incredibly useful for troubleshooting.

00:37:54.333 --> 00:37:57.566
Also for clinical queries
about significant change.

00:37:58.000 --> 00:38:00.733
And that is the scenario
that I described earlier,

00:38:00.733 --> 00:38:03.733
where you get a call from a clinician
saying

00:38:03.800 --> 00:38:07.866
my patient's value changed by two,

00:38:08.566 --> 00:38:12.566
and is this, clinically significant
or meaningful?

00:38:13.500 --> 00:38:15.600
We also used precision data

00:38:15.600 --> 00:38:18.966
when we set ranges for QC.

00:38:20.700 --> 00:38:22.300
So you really do want to understand

00:38:22.300 --> 00:38:25.300
how precise your tool is.

00:38:25.500 --> 00:38:27.833
You wouldn't want to, for example,

00:38:27.833 --> 00:38:32.933
set your QC ranges narrower
than the actualized precision

00:38:32.933 --> 00:38:35.933
of your instrument
because you'd be failing QC all the time.

00:38:39.800 --> 00:38:41.433
So we're going to transition

00:38:41.433 --> 00:38:45.333
to the third required study
for documenting method performance.

00:38:46.200 --> 00:38:49.133
And that is the reportable range.

00:38:49.133 --> 00:38:51.733
But let's start out with some definitions.

00:38:51.733 --> 00:38:54.400
First because

00:38:54.400 --> 00:38:57.566
this is an area of historical confusion.

00:38:58.633 --> 00:38:59.633
So the reportable

00:38:59.633 --> 00:39:04.333
range is sometimes used interchangeably
with the term

00:39:05.200 --> 00:39:08.200
Amr or analytical measurement range.

00:39:08.800 --> 00:39:10.866
So what is the Amr.

00:39:10.866 --> 00:39:14.833
The Amr is the range of values
that an instrument can report directly

00:39:15.133 --> 00:39:18.133
without alteration
or pretreatment of the sample.

00:39:18.166 --> 00:39:21.433
The Amr is determined by the instrument

00:39:21.633 --> 00:39:24.633
or assay manufacturer.

00:39:25.800 --> 00:39:28.866
If you're in the laboratory
developed test business, that's you.

00:39:28.900 --> 00:39:31.900
You're you're determining what the EMR is.

00:39:32.666 --> 00:39:35.966
The clinically reportable
range is the range of values

00:39:35.966 --> 00:39:38.966
that can be reported
with alteration of the sample.

00:39:39.133 --> 00:39:41.766
So for example,

00:39:41.766 --> 00:39:44.766
let's say I had a pro calcitonin

00:39:45.900 --> 00:39:47.700
in a patient sample.

00:39:47.700 --> 00:39:50.633
And the concentration was higher

00:39:50.633 --> 00:39:53.633
than my measurement
range of my instrument.

00:39:54.433 --> 00:39:58.000
I could dilute that sample and re quantify
the pro

00:39:58.000 --> 00:40:01.800
calcitonin, apply
the dilution factor and report,

00:40:02.866 --> 00:40:05.700
a numerical value for that sample.

00:40:05.700 --> 00:40:08.966
So this gets confusing
because in the lab medicine world

00:40:08.966 --> 00:40:11.966
we sometimes use these terms amr kra

00:40:12.333 --> 00:40:15.333
interchangeably.

00:40:16.066 --> 00:40:16.833
So what do you do.

00:40:16.833 --> 00:40:19.833
What do you decide to do
for patient samples?

00:40:20.700 --> 00:40:25.400
In my laboratories
I typically use the Amr,

00:40:25.433 --> 00:40:28.433
the analytical measurement
range as the range

00:40:29.200 --> 00:40:32.200
of values
for which I'm going to report on patients.

00:40:32.333 --> 00:40:34.466
But there are

00:40:34.466 --> 00:40:37.466
a handful of scenarios
where I need to modify that

00:40:37.633 --> 00:40:40.800
to create an expanded capability
for reporting.

00:40:41.400 --> 00:40:45.000
And that's typically at the high end
when I'm trying to quantify something,

00:40:46.700 --> 00:40:49.700
that would be clinically meaningful.

00:40:49.700 --> 00:40:54.000
So if you decide to expand the range

00:40:55.266 --> 00:40:57.200
of values that you're going

00:40:57.200 --> 00:41:00.266
to report for patients,
you've got to document

00:41:00.900 --> 00:41:04.266
that your tool can reliably quantify.

00:41:05.700 --> 00:41:09.700
So for
example, in the pro calcitonin assay

00:41:09.700 --> 00:41:12.900
I would need to prove
that diluting the patient sample

00:41:13.700 --> 00:41:17.033
and analyzing it
and applying that dilution factor

00:41:17.033 --> 00:41:20.033
produced reliable results.

00:41:23.000 --> 00:41:26.333
Let me briefly mention that if you

00:41:28.100 --> 00:41:30.466
if you modify

00:41:30.466 --> 00:41:33.266
the low end as well,
you're going to have to validate

00:41:33.266 --> 00:41:37.500
that your tool
can accurately quantify at that low end.

00:41:38.400 --> 00:41:41.400
So your job is a lot easier
if you just use

00:41:41.766 --> 00:41:44.400
the Amr that comes with the tool.

00:41:44.400 --> 00:41:48.733
The take home message is
if you make modifications to expand that

00:41:48.733 --> 00:41:53.400
range, you're going to have to document
that the method performance is acceptable.

00:41:56.166 --> 00:41:59.100
So how do you meet this requirement?

00:41:59.100 --> 00:42:02.100
How do you conduct a reportable
range study.

00:42:02.700 --> 00:42:06.300
Another term for
this would be a linearity study.

00:42:06.900 --> 00:42:09.366
And typically what is recommended.

00:42:09.366 --> 00:42:12.366
And again this is this is best practice

00:42:12.633 --> 00:42:16.833
is to take five
or more concentrations of analyte

00:42:17.200 --> 00:42:20.100
throughout the stated range
that you're trying to verify.

00:42:21.700 --> 00:42:24.700
And so a minimum of five

00:42:24.866 --> 00:42:27.866
samples at varying target concentrations.

00:42:28.966 --> 00:42:31.500
And then you're going to take

00:42:31.500 --> 00:42:35.033
two replicates at each for each sample.

00:42:35.966 --> 00:42:40.100
And then you're going to evaluate
linear fit with an x y plot.

00:42:40.300 --> 00:42:43.300
And then calculate regression statistics.

00:42:43.433 --> 00:42:47.200
So how do you procure materials
for this type of study.

00:42:48.166 --> 00:42:50.633
There's a bunch of different ways
you can do it.

00:42:50.633 --> 00:42:55.666
And which you choose
is going to depend on cost and resources,

00:42:55.833 --> 00:42:58.833
as well as availability
of patient samples.

00:42:59.566 --> 00:43:01.566
But here are some ideas.

00:43:01.566 --> 00:43:05.400
So you could take a, patient sample

00:43:05.400 --> 00:43:08.400
with a low concentration
of what you're trying to measure

00:43:08.400 --> 00:43:11.400
and spike it with

00:43:11.400 --> 00:43:14.100
the analyte of interest.

00:43:14.100 --> 00:43:17.233
You could take a high patient sample
and dilute it.

00:43:17.633 --> 00:43:19.800
You could mix

00:43:19.800 --> 00:43:23.000
patient samples,
you know, take one that's high and one

00:43:23.000 --> 00:43:26.833
that's low and create
a variety of target concentrations.

00:43:26.866 --> 00:43:30.000
That way you can also buy,

00:43:30.866 --> 00:43:35.100
you know, human serum and spike it
with a standard reference material.

00:43:36.200 --> 00:43:38.266
And then as another option,

00:43:38.266 --> 00:43:42.433
there are different vendors
that sell, linearity products.

00:43:42.433 --> 00:43:47.533
They're basically kits with predetermined
concentrations of the analyte

00:43:47.833 --> 00:43:51.000
that you can buy
and then analyze and duplicate

00:43:51.166 --> 00:43:54.166
to satisfy this requirement.

00:43:56.533 --> 00:43:57.800
So what do we do for

00:43:57.800 --> 00:44:01.533
for the published study
for pro calcitonin?

00:44:02.033 --> 00:44:06.366
Well,
we took a pooled patient serum sample.

00:44:06.600 --> 00:44:09.600
And one of the collaborators
was calibrator A

00:44:09.866 --> 00:44:12.900
and mixed them
to get six sample concentrations.

00:44:13.433 --> 00:44:17.766
And then we ran each of those six
in triplicate on each instrument.

00:44:19.166 --> 00:44:21.300
So we

00:44:21.300 --> 00:44:22.833
we went above and beyond here.

00:44:22.833 --> 00:44:25.600
As I mentioned
you know best practice is five.

00:44:25.600 --> 00:44:27.933
We went with six.

00:44:27.933 --> 00:44:31.600
What was nice about this
is that we were testing

00:44:31.600 --> 00:44:34.700
the native patient matrix,
but it would have

00:44:34.700 --> 00:44:37.700
also been acceptable to,

00:44:37.766 --> 00:44:41.100
take any of the other approaches
that I described on the previous slide.

00:44:42.133 --> 00:44:43.233
And we had good results.

00:44:43.233 --> 00:44:46.366
I didn't choose to put in a table here,
but both of the

00:44:46.800 --> 00:44:50.166
the instruments that we were evaluating,
the Sasson demonstrated,

00:44:51.133 --> 00:44:54.133
linearity
consistent with the manufacturer's claims.

00:44:54.133 --> 00:44:57.900
So what you want to see
is that, on your scatterplot,

00:44:58.266 --> 00:45:01.266
you want to see that
there is a linear relationship

00:45:01.933 --> 00:45:04.266
between the,

00:45:04.266 --> 00:45:08.100
target concentration of the analyte
and what your instrument

00:45:08.100 --> 00:45:12.066
actually measured over
the entire stated measurement range.

00:45:12.600 --> 00:45:15.566
And then your regression
statistics will prove to you

00:45:15.566 --> 00:45:18.566
that there is truly a linear fit.

00:45:21.566 --> 00:45:22.366
Okay.

00:45:22.366 --> 00:45:25.166
This is the fourth study
that's required for method

00:45:25.166 --> 00:45:28.166
verification
of a moderately complex assay.

00:45:29.000 --> 00:45:32.000
And that is an assessment
for reference intervals.

00:45:32.800 --> 00:45:35.400
So laboratories are not actually required

00:45:35.400 --> 00:45:38.400
to establish their own reference interval

00:45:39.366 --> 00:45:41.866
for an FDA approved assay.

00:45:41.866 --> 00:45:46.700
However, good practice is to verify
that the reference interval is appropriate

00:45:46.700 --> 00:45:51.000
for the patient population
for which the tool is going to be used.

00:45:52.800 --> 00:45:55.800
We're going to talk about how to do that.

00:45:56.100 --> 00:45:58.700
You can also use a previously established

00:45:58.700 --> 00:46:01.700
reference interval
at your home institution.

00:46:01.833 --> 00:46:04.833
You can create a new one
that's sort of at your discretion.

00:46:05.500 --> 00:46:07.866
So if you do have a previously established

00:46:07.866 --> 00:46:10.866
reference interval
you can transfer that one.

00:46:11.000 --> 00:46:15.333
If the subject population hasn't changed

00:46:15.666 --> 00:46:18.633
and if them method comparison shows

00:46:18.633 --> 00:46:21.700
that the two tools are equivalent
or comparable.

00:46:23.100 --> 00:46:27.200
But best practice is really to just test.

00:46:27.900 --> 00:46:30.966
So what you would want to do to verify
a reference interval

00:46:31.533 --> 00:46:34.800
is to analyze a minimum of 20 samples

00:46:35.366 --> 00:46:38.366
from a quote, normal population,

00:46:39.033 --> 00:46:41.600
and determine if the results for the test

00:46:41.600 --> 00:46:45.000
are within the proposed
reference interval.

00:46:46.400 --> 00:46:51.633
If less than or equal to two of those
patient samples are outside

00:46:51.633 --> 00:46:55.733
the limits, then you can accept the
proposed reference interval.

00:46:56.733 --> 00:46:59.733
Whether that reference interval
is coming from the package insert

00:47:00.000 --> 00:47:03.600
for the assay, or
if it's a previously established reference

00:47:03.600 --> 00:47:06.600
interval
already in use at your laboratory.

00:47:10.066 --> 00:47:13.033
So how are reference intervals determined?

00:47:13.033 --> 00:47:17.366
Typically
they're the central 95% of the values

00:47:17.366 --> 00:47:20.366
for the quote normal study population.

00:47:22.433 --> 00:47:24.100
However,

00:47:24.100 --> 00:47:26.700
if you do undertake a verification study

00:47:26.700 --> 00:47:31.366
for a for reference interval,
you're going to want to make sure

00:47:31.833 --> 00:47:34.800
that again, your samples

00:47:34.800 --> 00:47:37.600
are of sufficiently high quality

00:47:37.600 --> 00:47:40.800
that they have been processed,

00:47:41.000 --> 00:47:44.000
handled, stored appropriately.

00:47:44.033 --> 00:47:47.066
And depending on what you're
trying to validate here,

00:47:47.266 --> 00:47:50.266
you're going to want to be careful about,

00:47:50.800 --> 00:47:53.500
special or unique patient populations.

00:47:53.500 --> 00:47:56.500
So there are some assays for which

00:47:57.000 --> 00:47:59.700
there could be consideration for sex

00:47:59.700 --> 00:48:03.233
or age bracketed reference intervals.

00:48:03.400 --> 00:48:07.033
And so all of these considerations
go into your decision

00:48:07.033 --> 00:48:10.333
for how you're going to
try to meet this requirement.

00:48:13.600 --> 00:48:16.600
The manufacturers go through

00:48:16.666 --> 00:48:19.766
at the time of assay development.

00:48:19.766 --> 00:48:22.766
And they go through a full reference
interval study.

00:48:23.333 --> 00:48:25.466
And it's a real rigorous process.

00:48:25.466 --> 00:48:30.633
So there's predefined selection
criteria for, quote, normal individuals.

00:48:31.300 --> 00:48:35.100
You've got to have a robust
list of interferences or sources

00:48:35.100 --> 00:48:40.266
of biological variability for the tests
that you want to make sure or not.

00:48:41.000 --> 00:48:44.900
Present in the samples
that are included for the study.

00:48:46.233 --> 00:48:48.233
You've got to decide
on the appropriate number

00:48:48.233 --> 00:48:51.700
of individuals to include
in the reference interval study.

00:48:52.833 --> 00:48:55.833
So one of the magic numbers is 120.

00:48:56.166 --> 00:48:59.366
But depending on how much confidence
you want to have, that number

00:48:59.366 --> 00:49:01.000
could be much greater.

00:49:01.000 --> 00:49:04.000
You've got to collect
and analyze specimens

00:49:04.700 --> 00:49:07.533
and, make sure that that is all happening

00:49:07.533 --> 00:49:11.133
in the same way
that you would be analyzing,

00:49:12.166 --> 00:49:14.633
patient specimens.

00:49:14.633 --> 00:49:18.800
So if you've got a reference interval
that's going to be partitioned

00:49:18.800 --> 00:49:22.266
by age, for example, and you're
a manufacturer, you've got to make sure

00:49:22.266 --> 00:49:27.366
that you have at least 120 specimens
to include within each partition.

00:49:27.600 --> 00:49:30.600
So it gets to be a lot of work.

00:49:31.266 --> 00:49:33.700
As I mentioned,
you don't have to do a full reference

00:49:33.700 --> 00:49:38.033
interval study for every tool that you're
looking to integrate into your lab.

00:49:38.966 --> 00:49:42.266
But it is good laboratory practice
to verify

00:49:42.266 --> 00:49:45.800
with a minimum of 20 samples
from a normal population

00:49:46.233 --> 00:49:49.066
that the reference interval being proposed

00:49:49.066 --> 00:49:52.066
or transferred is appropriate.

00:49:53.266 --> 00:49:55.766
So what do we do for pro calcitonin?

00:49:55.766 --> 00:49:58.966
We took samples from 20
apparently healthy donors

00:49:59.400 --> 00:50:03.533
and collected blood
or blood into Steve and Steve tubes.

00:50:04.200 --> 00:50:06.133
We did have exclusion criteria.

00:50:07.200 --> 00:50:09.600
So your exclusion

00:50:09.600 --> 00:50:12.600
criteria will be different depending
on what you're trying to evaluate.

00:50:12.800 --> 00:50:19.133
So for pro calcitonin, because
this is an assay that will be ordered

00:50:20.166 --> 00:50:22.633
for patients that are acutely ill.

00:50:22.633 --> 00:50:26.700
One of our exclusion criteria,
for example, had to do with,

00:50:27.400 --> 00:50:29.900
you know, the the health

00:50:29.900 --> 00:50:32.900
at that moment in time of the donor

00:50:33.833 --> 00:50:36.500
making sure they didn't
have some type of background,

00:50:36.500 --> 00:50:39.500
viral or bacterial infection, for example.

00:50:40.833 --> 00:50:45.900
So what we found from our study
was that the samples have pro

00:50:45.900 --> 00:50:51.333
calcitonin concentrations of 0.01
to 0.03 nanograms per milliliter.

00:50:51.866 --> 00:50:54.933
And all of them fall
within the manufacturer's

00:50:54.933 --> 00:50:57.933
proposed claims for reference intervals.

00:50:58.400 --> 00:51:02.766
So given these data,
we concluded that the proposed

00:51:02.766 --> 00:51:05.766
reference interval
was appropriate for our patients.

00:51:09.800 --> 00:51:11.400
So we've just covered the four

00:51:11.400 --> 00:51:15.000
basic studies
that are required for method verification.

00:51:16.833 --> 00:51:17.700
It's those same

00:51:17.700 --> 00:51:20.966
four studies are required
for method validation as well.

00:51:21.633 --> 00:51:24.633
But now we're going to talk about
the two extra studies

00:51:24.633 --> 00:51:27.633
that are required for method validation.

00:51:28.400 --> 00:51:31.300
So accuracy precision

00:51:31.300 --> 00:51:34.300
reportable range and reference interval.

00:51:34.333 --> 00:51:38.166
That's the minimum you need for an FDA
cleared or approved assay.

00:51:38.200 --> 00:51:41.200
As I mentioned in previous slides.

00:51:41.733 --> 00:51:44.033
So now we're entering the world of

00:51:44.033 --> 00:51:47.633
what additionally
do you need to do for a modified

00:51:47.633 --> 00:51:51.800
FDA approved assay or a laboratory
developed test?

00:51:53.000 --> 00:51:56.000
There's two extra studies
that you have to do.

00:51:56.200 --> 00:52:00.733
And the first one is an assessment
for analytical sensitivity.

00:52:01.700 --> 00:52:04.800
So what this does is it establishes

00:52:04.800 --> 00:52:07.800
the lower detection limit of the assay.

00:52:09.900 --> 00:52:13.300
What you do to meet this requirement
is you acquire measurements

00:52:13.300 --> 00:52:16.300
from multiple independent blank

00:52:16.366 --> 00:52:19.200
and low concentration level samples.

00:52:20.500 --> 00:52:23.366
And you want to
have at least four samples of each type.

00:52:23.366 --> 00:52:27.700
So for blinks
and for low concentration samples

00:52:28.566 --> 00:52:30.733
how do you generate these samples.

00:52:30.733 --> 00:52:33.833
You can dilute samples
so you can spike samples

00:52:35.166 --> 00:52:37.366
and try to

00:52:37.366 --> 00:52:41.466
to generate, samples around the targets

00:52:42.666 --> 00:52:46.433
at that low
and you definitely want to have a low

00:52:46.433 --> 00:52:50.433
level sample around the presumed
limit of detection of the assay.

00:52:51.200 --> 00:52:52.066
And then what you're going to do

00:52:52.066 --> 00:52:55.066
is you're going to test these samples
and replicate

00:52:55.633 --> 00:52:58.633
and do some data analysis.

00:52:59.666 --> 00:53:00.333
So even though

00:53:00.333 --> 00:53:03.333
it wasn't strictly required for the pro
calcitonin assay

00:53:03.333 --> 00:53:07.600
because again, it it's an FDA approved
assay that we weren't modifying.

00:53:08.633 --> 00:53:11.833
We decided to do an analytical sensitivity
study,

00:53:12.366 --> 00:53:15.800
and many laboratories would tell you

00:53:15.800 --> 00:53:18.800
that this is the best laboratory practice

00:53:18.900 --> 00:53:21.933
to do this study,
even if it is an FDA approved one.

00:53:22.433 --> 00:53:25.366
But according to Clea,
it's not absolutely required.

00:53:26.366 --> 00:53:29.233
But here's
an example of how you would do this.

00:53:29.233 --> 00:53:33.033
So for the limit of blank determination,
we took a calibrator calibrator

00:53:33.033 --> 00:53:36.600
A which had a target concentration
of zero zero calcitonin.

00:53:37.100 --> 00:53:40.100
And we analyzed it
ten times on each instrument.

00:53:40.466 --> 00:53:42.300
We also took calibrator B

00:53:42.300 --> 00:53:45.800
which had a target concentration
of 0.1 nanograms per mole.

00:53:45.800 --> 00:53:48.800
So that would be the low level
measure and sample

00:53:48.966 --> 00:53:51.966
and analyzed it
three times on each instrument.

00:53:52.500 --> 00:53:54.566
For our limit of quantitation
determination

00:53:54.566 --> 00:53:58.500
we took eight calibrator samples
and that included four low level

00:53:58.500 --> 00:54:01.500
concentrations
and analyzed them over ten days.

00:54:01.766 --> 00:54:05.866
And we compared the results from
the statistics to the manufacturer's claim

00:54:06.933 --> 00:54:10.533
and showed that this assay was measuring

00:54:10.533 --> 00:54:13.766
as expected at that low
end of quantification.

00:54:15.900 --> 00:54:17.700
These studies can be challenging to do.

00:54:21.166 --> 00:54:21.666
This is the

00:54:21.666 --> 00:54:24.666
last study
that's required for method validation.

00:54:25.633 --> 00:54:28.633
And that is a study for analytical
specificity,

00:54:28.933 --> 00:54:31.933
also known as interference study.

00:54:32.900 --> 00:54:35.733
So this is important
because you're really getting

00:54:35.733 --> 00:54:39.233
at the ability of the assay
to correctly identify

00:54:40.000 --> 00:54:43.000
correct to correctly quantify

00:54:43.566 --> 00:54:47.200
something of interest
when there could be cross-reactive

00:54:47.200 --> 00:54:50.200
or interfering substances around.

00:54:52.133 --> 00:54:54.333
And as I mentioned,

00:54:54.333 --> 00:54:58.533
this is only a requirement
for modified assays or DTS.

00:54:58.933 --> 00:55:02.933
But again, I would argue
best practice is to just do it

00:55:03.000 --> 00:55:06.000
even if you have an FDA approved assay.

00:55:06.000 --> 00:55:09.000
And that's because in real life,

00:55:09.400 --> 00:55:11.700
there's almost always

00:55:11.700 --> 00:55:14.300
a percentage of samples
that are going to come to your lab

00:55:14.300 --> 00:55:18.000
that have some type
of interference present, whether that's

00:55:18.833 --> 00:55:22.066
some hemolysis, because there was
traumatic thing, a puncture

00:55:22.500 --> 00:55:25.833
or the patient's on medication
that can interfere, etc..

00:55:28.633 --> 00:55:31.600
So let's
talk about what what is an interference.

00:55:31.600 --> 00:55:34.600
An interference occurs
when there's a significant difference

00:55:34.600 --> 00:55:38.200
in a test result because
of some other component of the sample.

00:55:38.600 --> 00:55:42.300
So there's some other component in there
other than the thing that you actually

00:55:42.300 --> 00:55:45.900
want to measure that's
causing the measurement to be inaccurate.

00:55:46.433 --> 00:55:49.766
And this can cause a concentration
dependent difference in the test.

00:55:50.966 --> 00:55:53.233
So manufacturers are required to screen

00:55:53.233 --> 00:55:56.233
for interfering substances
during method development.

00:55:56.566 --> 00:56:01.500
But good idea to just make sure
that that all holds up as expected.

00:56:01.666 --> 00:56:04.666
When you've got the tool in your hands.

00:56:04.966 --> 00:56:06.966
So how do you do this?

00:56:06.966 --> 00:56:09.966
You perform a pair of different study.

00:56:10.033 --> 00:56:13.200
So what you're going to do is you're going
to take pairs of test samples,

00:56:13.966 --> 00:56:19.200
and you're going to spike one
with a potential interfering substance.

00:56:19.500 --> 00:56:22.266
And then you're going to measure
the analyte of interest.

00:56:22.266 --> 00:56:24.466
And calculate
the difference from baseline.

00:56:24.466 --> 00:56:27.400
It's almost like having,
you know, for each set

00:56:27.400 --> 00:56:31.266
you've got your control tube
and your your test tube, right.

00:56:31.733 --> 00:56:34.866
So if you see no difference
in the quantification of the analyte

00:56:34.900 --> 00:56:38.233
between the tube
with the interfering substance

00:56:38.866 --> 00:56:42.566
or potential interfering substance
compared to the control tube,

00:56:42.666 --> 00:56:45.766
you can conclude
no error from interference.

00:56:47.266 --> 00:56:49.233
You can do this with patient samples.

00:56:49.233 --> 00:56:51.233
In fact, it's best to do it that way.

00:56:51.233 --> 00:56:54.233
You don't want to make sure that you,

00:56:54.600 --> 00:56:55.866
include a sufficient number

00:56:55.866 --> 00:56:58.866
of sample pairs
over your measurement range,

00:56:59.100 --> 00:57:02.700
if at all possible,
but also within the set.

00:57:02.700 --> 00:57:05.666
Let's say
I take five pairs of test samples.

00:57:05.666 --> 00:57:08.700
You really only want one variable
to be changing at a time.

00:57:08.933 --> 00:57:11.933
So let's say going back
to your calcitonin,

00:57:12.400 --> 00:57:15.400
let's say I've got,

00:57:15.700 --> 00:57:18.900
samples that are artificially generated.

00:57:18.900 --> 00:57:20.300
And the target concentration

00:57:20.300 --> 00:57:23.566
of calcitonin in those samples
is two nanograms per ML.

00:57:24.200 --> 00:57:27.700
What I'm going to do is I'm going to spike
in increasing concentrations

00:57:27.700 --> 00:57:32.766
of bilirubin over those sets of samples.

00:57:33.100 --> 00:57:36.433
And again I'm quantifying
profiles of tone in each pair.

00:57:36.800 --> 00:57:39.566
And I'm comparing
a difference from baseline.

00:57:39.566 --> 00:57:42.566
So if I see no difference
I can conclude that

00:57:43.366 --> 00:57:45.600
no interference from bilirubin.

00:57:45.600 --> 00:57:49.800
However if the difference from baseline
becomes greater than allowable error

00:57:51.033 --> 00:57:52.266
at any point,

00:57:52.266 --> 00:57:57.800
that would be evidence for interference
by billing room and on the inst.

00:57:57.900 --> 00:58:00.900
The assays ability to quantify
pro calcitonin.

00:58:01.500 --> 00:58:03.733
And that information is helpful

00:58:03.733 --> 00:58:06.733
for having some criteria
for sample rejection.

00:58:07.266 --> 00:58:10.800
For patients
that have, hyperbole rubidium.

00:58:12.733 --> 00:58:14.866
So I've thrown a lot at you today.

00:58:14.866 --> 00:58:17.866
These are complex concepts.

00:58:19.000 --> 00:58:20.566
And in summary,

00:58:20.566 --> 00:58:25.000
I will remind you that the regulations
require performance

00:58:25.000 --> 00:58:28.800
verification of new diagnostic tools
prior to patient testing.

00:58:28.800 --> 00:58:32.500
But they don't tell you
how to how to meet the regulations.

00:58:32.533 --> 00:58:35.533
There's no one size fits all approach.

00:58:36.700 --> 00:58:38.200
And the largest take home point

00:58:38.200 --> 00:58:41.700
here is really precision accuracy.

00:58:42.000 --> 00:58:44.000
Recordable range and reference intervals

00:58:44.000 --> 00:58:47.266
must be evaluated at minimum
for all non WAV tests.

00:58:48.100 --> 00:58:51.133
And if you're in the laboratory
developed test world

00:58:51.500 --> 00:58:54.166
or you're modifying an FDA approved assay,
don't

00:58:54.166 --> 00:58:58.566
forget about analytical sensitivity
and analytical specificity.

00:58:59.733 --> 00:59:00.933
Thank you for your attention.
