130578006 |
Exon 15 |
Silent |
c.1932C>T |
p. Ile644Ile |
Benign |
12 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130578180 |
Intron 14 |
Splice Site |
c.1852+42C>T |
|
Pending classification |
1 |
Plumitallo (2018) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130578106 |
Intron 14 |
Deletion |
c.1853-21_1853-26del |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: 6bp del - Unknown significance. Not predicted to affect splicing. (Edinburgh) |
130578230 |
Exon 14 |
Missense |
c.1844C>T |
p.Ser615Leu |
Benign |
6 |
Kuehl (2005) Bossler (2006) Gedge (2007) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated. Seen in one patient with c.659_660TC>AT in Gedge (2007) |
130578263 |
Exon 14 |
Missense |
c.1811C>A |
p.Ala604Asp |
Pending classification |
2 |
Bossler (2006) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: PolyPhen2 possibly damaging 0.889. (Edinburgh) |
130578280 |
Exon 14 |
Silent |
c.1794T>G |
p.Gly598Gly |
Benign |
1 |
Abdalla (2005) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130578280 |
Exon 14 |
Silent |
c.1794T>C |
p.Gly598Gly |
Benign |
8 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: Patient also has mutation in exon 6. (Edinburgh) |
130578312 |
Exon 14 |
Missense |
c.1762G>T |
p.Val588Phe |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130578312 |
Exon 14 |
Missense |
c.1762G>A |
p.Val588Ile |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Predicted to be tolerated. (Edinburgh) |
130578332 |
Exon 14-15 |
Large Deletion |
EX14-15del |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: c.1742-?_1977+?del |
130578363 |
Intron 13 |
Intronic |
c.1742-31T>C |
|
Benign |
1 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130578380 |
Intron 13 |
Splice Site |
c.1742-48_1743del |
|
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130578404 |
Intron 13 |
Intronic |
c.1742-72T>C |
|
Benign |
3 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 Smoot (2009) |
 Clinical Features: E T H P Co-segregation: mRNA study: Functional study: Comments: patient also had has deletion by MLPA for this exon |
130579349 |
Intron 13 |
Intronic |
c.1741+79G>A |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130579393 |
Intron 13 |
Intronic |
c.1741+35G>A |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579431 |
Exon 13 |
Duplication |
c.1738_1741dup |
p.Gly581Valfs*171 |
Pathogenic |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579436 |
Exon 13 |
Deletion |
c.1733_1737del |
p.Asp578Valfs*171 |
Pathogenic |
1 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579439 |
Exon 13 |
Deletion |
c.1730_1731del |
p.Pro577Argfs*173 |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130579443 |
Exon 13 |
Missense |
c.1726A>G |
p.Ser576Gly |
Benign |
2 |
ARUP Laboratories McDonald (2009) |
 Clinical Features: E T F Co-segregation: Unaffected father mRNA study: Functional study: Comments: |
130579445 |
Exon 13 |
Missense |
c.1724T>C |
p.Ile575Thr |
Pending classification |
2 |
Lastella (2003) Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579448 |
Exon 13 |
Missense |
c.1721T>C |
p.Ile574Thr |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579454 |
Exon 13 |
Nonsense |
c.1715T>A |
p.Leu572* |
Pathogenic |
1 |
Paquet (2001) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579457 |
Exon 13 |
Missense |
c.1712G>A |
p.Arg571His |
Suspected Benign |
8 |
ARUP Laboratories McDonald (2009) |
 Clinical Features: E T P F Co-segregation: Unaffected grandparent and sib with recurrent epistaxis Affected father and sibling mRNA study: add refere for multipl mutation paper Functional study: Comments: |
130579457 |
Exon 13 |
Deletion |
c.1712del |
p.Arg571Profs*2 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579462 |
Exon 13 |
Deletion |
c.1707del |
p.Phe569Leufs*4 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130579471 |
Exon 13 |
Deletion |
c.1698del |
p.Thr567Leufs*6 |
Pathogenic |
2 |
Bossler (2006) Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579480 |
Exon 13 |
Deletion |
c.1689_1699del |
p.Glu563Aspfs*12 |
Pathogenic |
1 |
Cymerman (2000) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579482 |
Exon 13 |
Nonsense |
c.1687G>T |
p.Glu563* |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130579482 |
Exon 13 |
Deletion |
c.1687del |
p.Glu563Lysfs*10 |
Pathogenic |
2 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130579482 |
Exon 13 |
Large Duplication |
EX13dup |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: c.1687-?_1741+?dup |
130579484 |
Intron 12 |
Splice Site |
c.1687-2A>G |
|
Pathogenic |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130579489 |
Intron 12 |
Splice Site |
c.1687-7C>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580300 |
Intron 12 |
Intronic |
c.1686+99T>A |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130580393 |
Intron 12 |
Splice Site |
c.1686+6T>G |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Not predicted to affect splicing. (Edinburgh) |
130580394 |
Intron 12 |
Splice Site |
c.1686+5G>C |
|
Pending classification |
4 |
Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580397 |
Intron 12 |
Splice Site |
c.1686+2T>C |
|
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580398 |
Intron 12 |
Splice Site |
c.1686+1insTCTG |
|
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: P, E, T, G Co-segregation: mRNA study: Functional study: Comments: |
130580398 |
Intron 12 |
Splice Site |
c.1686+1del |
|
Pathogenic |
2 |
Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580401 |
Exon 12 |
Nonsense |
c.1684C>T |
p.Gln562* |
Pathogenic |
2 |
Letteboer (2005) Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580407 |
Exon 12 |
Nonsense |
c.1678C>T |
p.Gln560* |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580413 |
Exon 12 |
Duplication |
c.1672_1684dup |
p.Gln562Argfs*9 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580413 |
Exon 12 |
Deletion |
c.1672_1684del |
p.Gly558Argfs*11 |
Pathogenic |
1 |
Paquet (2001) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580414 |
Exon 12 |
Silent |
c.1671C>T |
p.Thr557Thr |
Benign |
2 |
ARUP Laboratories |
 Clinical Features: E T G Co-segregation: mRNA study: Functional study: Comments: |
130580424 |
Exon 12 |
Duplication |
c.1661_1664dup |
p.Lys556Serfs*12 |
Pathogenic |
1 |
Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580428 |
Exon 12 |
Deletion |
c.1657del |
p.Leu553Cysfs*20 |
Pathogenic |
4 |
McAllister (1995) Gallione (1998) McAllister (1995) ARUP Laboratories |
 Clinical Features: E T G P F Co-segregation: mRNA study: Functional study: Comments: |
130580439 |
Exon 12 |
Missense |
c.1646G>A |
p.Cys549Tyr |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580445 |
Exon 12 |
Missense |
c.1640T>G |
p.Leu547Arg |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130580445 |
Exon 12 |
Missense |
c.1640T>C |
p.Leu547Pro |
Pending classification |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580451 |
Exon 12 |
Missense |
c.1634G>A |
p.Gly545Asp |
Uncertain |
2 |
Argyriou(2006) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: Assumed mutation. Shows segregation with disease. |
130580452 |
Exon 12 |
Missense |
c.1633G>A |
p.Gly545Ser |
Benign |
2 |
Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Highly conserved. SNP rs142896669 freq. 0.002. (Edinburgh) |
130580455 |
Exon 12 |
Deletion |
c.1630del |
p.Thr544Profs*8 |
Pathogenic |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580460 |
Exon 12 |
Duplication |
c.1625_1626dup |
p.Lys543Profs*10 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580462 |
Exon 12 |
Duplication |
c.1623_1624dup |
p.Pro542Hisfs*11 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580474 |
Exon 12 |
Nonsense |
c.1611C>A |
p.Tyr537* |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580476 |
Exon 12 |
Deletion |
c.1609del |
p.Tyr537Thrfs*15 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580490 |
Exon 12 |
Missense |
c.1595T>C |
p.Phe532Ser |
Uncertain |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: T P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated |
130580499 |
Exon 12 |
Missense |
c.1586G>A |
p.Arg529His |
Pathogenic |
3 |
Bossler (2006) Gedge (2007) Nishida (2012) ARUP Laboratories |
 Clinical Features: P F Co-segregation: mRNA study: Functional study: Comments: |
130580500 |
Exon 12 |
Missense |
c.1585C>T |
p.Arg529Cys |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: P Co-segregation: mRNA study: Functional study: Comments: |
130580502 |
Exon 12 |
Duplication |
c.1583dup |
p.Arg529Alafs*38 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580503 |
Exon 12 |
Deletion |
c.1582_1583del |
p.Pro528Alafs*38 |
Pathogenic |
3 |
Submitted by Edinburgh Laboratories 2013 Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580531 |
Exon 12 |
Deletion |
c.1554_1555del |
p.Leu519Alafs*8 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580532 |
Exon 12 |
Deletion |
c.1553_1554del |
p.Ser518Thrfs*9 |
Pathogenic |
2 |
McAllister (1994) Lastres (1994) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580535 |
Exon 12 |
Deletion |
c.1550_1551del |
p.Val517Glufs*10 |
Pathogenic |
2 |
McAllister (1995) Olivieri (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580559 |
Exon 12 |
Deletion |
c.1526del |
p.Gly509Alafs*9 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580563 |
Exon 12 |
Nonsense |
c.1522C>T |
p.Gln508* |
Pathogenic |
1 |
Lesca (2004) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580572 |
Exon 12 |
Nonsense |
c.1513G>T |
p.Glu505* |
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580575 |
Exon 12 |
Missense |
c.1510G>A |
p.Val504Met |
Benign |
4 |
Lesca (2004) Brusgaard (2004) McDonald (2009) Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: Seen in unaffected brother of proband, but not in affected nephew and mother (McDonald, 2009). mRNA study: Functional study: Comments: Frequency is 1% in African Americans (5400 exomes, evs.gs.washinton.edu). (Edinburgh) |
130580576 |
Exon 12 |
Deletion |
c.1509del |
p.Val504Trpfs*14 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580584 |
Exon 12 |
Nonsense |
c.1501G>T |
p.Gly501* |
Pathogenic |
2 |
IMPACT Genetics ARUP Laboratories |
 Clinical Features: E, T, P, F Co-segregation: mRNA study: Functional study: Comments: |
130580589 |
Exon 12 |
Duplication |
c.1496dup |
p.Glu500* |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: E, P, F Co-segregation: mRNA study: Functional study: Comments: |
130580605 |
Exon 12 |
Deletion |
c.1480del |
p.His494Thrfs*24 |
Pathogenic |
1 |
Gedge (2007) |
 Clinical Features: E T C P Co-segregation: mRNA study: Functional study: Comments: |
130580607 |
Exon 12 |
Deletion |
c.1478del |
p.Cys493Serfs*25 |
Pathogenic |
1 |
Olivieri (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580609 |
Exon 12 |
Duplication |
c.1476dup |
p.Cys493Leufs*8 |
Pathogenic |
1 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580615 |
Exon 12 |
Insertion |
c.1470_1471insGGGTG |
p.Asp491Glyfs*29 |
Pathogenic |
1 |
Gedge (2007) |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130580615 |
Exon 12 |
Duplication |
c.1470dup |
p.Asp491Argfs*10 |
Pathogenic |
8 |
ARUP Laboratories Cymerman (2000) Paquet (2001) Lesca (2004) Abdalla (2005) Bossler (2006) Gedge (2007) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580616 |
Exon 12 |
Nonsense |
c.1469T>G |
p.Leu490* |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580616 |
Exon 12 |
Missense |
c.1469T>C |
p.Leu490Ser |
Uncertain |
2 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580620 |
Exon 12 |
Deletion |
c.1465_1466del |
p.Gln489Valfs*11 |
Pathogenic |
1 |
Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580633 |
Exon 12 |
Silent |
c.1452C>T |
p.Ser484Ser |
Benign |
3 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580640 |
Exon 12 |
Missense |
c.1445C>T |
p.Ser482Phe |
Pending classification |
1 |
Gedge (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Seen in a patient with ENG c.991G>A. |
130580651 |
Exon 12 |
Deletion |
c.1434_1435del |
p.Arg478Serfs*22 |
Pathogenic |
3 |
Gallione (1998) Letteboer (2005) Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580657 |
Intron 11 |
Splice Site |
c.1429-18_1429-1del |
|
Pathogenic |
1 |
Olivieri (2018 submitted) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580657 |
Intron 11 |
Splice Site |
c.1429-1G>A |
|
Pathogenic |
4 |
Schulte (2005) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130580665 |
Intron 11 |
Splice Site |
c.1429-9C>G |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580993 |
Intron 11 |
Splice Site |
c.1428+2T>C |
|
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580993 |
Intron 11 |
Splice Site |
c.1428+2T>G |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580994 |
Intron 11 |
Splice Site |
c.1428+1G>A |
|
Pathogenic |
6 |
ARUP Laboratories Nishida (2012) |
 Clinical Features: E C P F Co-segregation: mRNA study: Functional study: Comments: |
130580995 |
Exon 11 |
Splice Site |
c.1428G>C |
p.Gln476His |
Pending classification |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Suspected splice site defect. |
130580995 |
Exon 11 |
Splice Site |
c.1428G>A |
p.Gln476Gln |
Pending classification |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130580997 |
Exon 11 |
Missense |
c.1426C>A |
p.Gln476Lys |
Likely Benign |
|
Personal communication with Dr. Pernille Torring (Danish group) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Benign. Found in trans with pathogenic mutation (ENG; c.360+1G>A), didn't segregate with disease. (Pernille Torring). |
130581008 |
Exon 11 |
Indel |
c.1415_1417delinsGT |
p.Gln472Argfs*19 |
Pathogenic |
3 |
Cymerman (2000) Paquet (2001) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T C P Co-segregation: mRNA study: Functional study: Comments: |
130581009 |
Exon 11 |
Nonsense |
c.1414C>T |
p.Gln472* |
Pathogenic |
4 |
McAllister (1995) Pece (1997) Bayrak-Toydemir (2006) Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581013 |
Exon 11 |
Deletion |
c.1410del |
p.Gln471Serfs*20 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581016 |
Exon 11 |
Silent |
c.1407G>A |
p.Pro469Pro |
Benign |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E P F Co-segregation: mRNA study: Functional study: Comments: |
130581025 |
Exon 11 |
Deletion |
c.1398del |
p.Ile467Serfs*24 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581027 |
Exon 11 |
Missense |
c.1396A>C |
p.Thr466Pro |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130581031 |
Exon 11 |
Duplication |
c.1392dup |
p.Asn465Glnfs*36 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.1392_1393dupC; p.Asn465fsX500 |
130581049 |
Exon 11 |
Silent |
c.1374A>G |
p.Pro458Pro |
Benign |
13 |
Bossler (2006) Prigoda (2006) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T H P F Co-segregation: mRNA study: Functional study: Comments: No splice change, SNP rs34828244 with freq. 0.004. Seen with suspected pathogenic variant. (Edinburgh) |
130581058 |
Exon 11 |
Nonsense |
c.1365C>T |
p.Tyr455Tyr |
Pending classification |
1 |
Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581062 |
Exon 11 |
Duplication |
c.1361dup |
p.Tyr455Leufs*46 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581073 |
Exon 11 |
Silent |
c.1350C>T |
p.Phe450Phe |
Pending classification |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581076 |
Exon 11 |
Deletion |
c.1347_1350del |
p.Phe450Serfs*40 |
Pathogenic |
4 |
Cymerman (2003) Bossler (2006) Nishida (2012) |
 Clinical Features: Co-segregation: 4 individuals mRNA study: Functional study: Comments: |
130581077 |
Exon 11 |
Duplication |
c.1346_1347dup |
p.Phe450Leufs*42 |
Pathogenic |
2 |
Prigoda (2006) Lee (2011) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581077 |
Exon 11 |
Deletion |
c.1346_1347del |
p.Ser449Phefs*51 |
Pathogenic |
6 |
Cymerman (2003) Lesca (2004) Letteboer (2005) Schulte (2005) Bayrak-Toydemir (2006) Nishida (2012) Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581089 |
Exon 11 |
Deletion |
c.1334del |
p.Met445Argfs*46 |
Pathogenic |
1 |
Harrison (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581105 |
Exon 11 |
Missense |
c.1318G>A |
p.Val440Met |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581106 |
Exon 11 |
Insertion |
c.1317_1318insA |
p.Val440Serfs*61 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581108 |
Exon 11 |
Duplication |
c.1315_1322dup |
p.His441Glnfs*53 |
Pathogenic |
1 |
Argyriou(2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581111 |
Exon 11 |
Indel |
c.1312_1341delinsCTGGGC |
p.Lys438_Ala658delins43 |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588816 |
Exon 11 |
Duplication |
c.1336_1337dup |
p.Asp446Glufs*46 |
Pathogenic |
1 |
Mutize (2020) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581114 |
Intron 10 |
Splice Site |
c.1312-3C>G |
|
Uncertain |
2 |
Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581177 |
Intron 10 |
Intronic |
c.1312-66C>A |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: T Co-segregation: mRNA study: Functional study: Comments: |
130581812 |
Intron 10 |
Intronic |
c.1311+89C>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: P Co-segregation: mRNA study: Functional study: Comments: |
130581896 |
Intron 10 |
Splice Site |
c.1311+5G>A |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: 2 affected children also have variant mRNA study: Functional study: Comments: |
130581899 |
Intron 10 |
Splice Site |
c.1311+2T>C |
|
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581899 |
Intron 10 |
Splice Site |
c.1311+2T>G |
|
Pathogenic |
4 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E P F Co-segregation: mRNA study: Functional study: Comments: |
130581899 |
Intron 10 |
Splice Site |
c.1311+2T>A |
|
Pathogenic |
1 |
Cymerman (2000) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581900 |
Intron 10 |
Splice Site |
c.1311+1G>A |
|
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: P, E, F Co-segregation: mRNA study: Functional study: Comments: |
130581900 |
Intron 10 |
Splice Site |
c.1311+1dup |
|
Suspected Pathogenic |
1 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E P F Co-segregation: mRNA study: Functional study: Comments: |
130581901 |
Exon 10 |
Splice Site |
c.1311G>T |
p.Arg437Arg |
Suspected Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130581901 |
Exon 10 |
Splice Site |
c.1311G>C |
p.Arg437Arg |
Pending classification |
1 |
Gallione (1998) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9b. |
130581901 |
Exon 10 |
Splice Site |
c.1311G>A |
p.Arg437Arg |
Pending classification |
2 |
Letteboer (2005) Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9b. |
130581901 |
Exon 10 |
Deletion |
c.1311del |
p.Lys439Argfs*52 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9b. |
130581902 |
Exon 10 |
Missense |
c.1310G>A |
p.Arg437Gln |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130581903 |
Exon 10 |
Missense |
c.1309C>G |
p.Arg437Gly |
Pending classsification |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581903 |
Exon 10 |
Missense |
c.1309C>T |
p.Arg437Trp |
Pathogenic |
4 |
Bossler (2006) Gedge (2007) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated |
130581906 |
Exon 10 |
Nonsense |
c.1306C>T |
p.Gln436* |
Pathogenic |
2 |
Lenato (2006) ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9b. |
130581914 |
Exon 10 |
Nonsense |
c.1298C>G |
p.Ser433* |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581920 |
Exon 10 |
Nonsense |
c.1292C>A |
p.Ser431* |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9b. |
130581935 |
Exon 10 |
Missense |
c.1277T>G |
p.Val426Gly |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130581940 |
Intron 9 |
Splice Site |
c.1273-1G>C |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581940 |
Intron 9 |
Splice Site |
c.1273-1G>A |
|
Pathogenic |
1 |
Kjeldsen (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130581941 |
Intron 9 |
Splice Site |
c.1273-2A>G |
|
Pathogenic |
2 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130581943 |
Intron 9 |
Splice Site |
c.1273-4G>A |
|
Uncertain |
1 |
Prigoda (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130582169 |
Intron 9 |
Splice Site |
c.1272+10G>A |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130582183 |
Exon 9 |
Missense |
c.1268A>G |
p.Asn423Ser |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582183 |
Exon 9 |
Deletion |
c.1268del |
p.Asn423Metfs*68 |
Pathogenic |
9 |
ARUP Laboratories Gallione (1998) Abdalla (2005) Gedge (2007) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: Previously reported as 1267delA in exon 9a. |
130582196 |
Exon 9 |
Deletion |
c.1255del |
p.Ser419Valfs*2 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582208 |
Exon 9 |
Nonsense |
c.1243C>T |
p.Gln415* |
Pathogenic |
2 |
Wehner (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582213 |
Exon 9 |
Missense |
c.1238G>T |
p.Gly413Val |
Pending classification |
2 |
Gallione (2000) Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582216 |
Exon 9 |
Missense |
c.1235G>A |
p.Cys412Tyr |
Uncertain |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: T Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated. Found in a likely unaffected individual, reported as in exon 8 in paper. |
130582217 |
Exon 9 |
Missense |
c.1234T>A |
p.Cys412Ser |
Pending classification |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582220 |
Exon 9 |
Deletion |
c.1231_1233del |
p.Ser411del |
Pending classification |
1 |
Paquet (2001) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582231 |
Exon 9 |
Missense |
c.1220G>T |
p.Ser407Ile |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Grantham difference 141,polyphen SIFT, A-GVGD all suggest pathogenic. Highly conserved residue occurs in functional domain. Variant at same codon (p. Ser407Asn) published as pathogenic. (Edinburgh) |
130582231 |
Exon 9 |
Missense |
c.1220G>A |
p.Ser407Asn |
Pending classification |
3 |
Paquet (2001) Wehner (2006) Nishida (2012) |
 Clinical Features: Co-segregation: 2 individuals mRNA study: Functional study: Comments: Original report is exon 9a. |
130582236 |
Exon 9 |
MIssense |
c.1215G>C |
p.Leu405Phe |
Pending classification |
2 |
Submitted by Edinburgh Laboratories 2013 IMPACT Genetics |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: 3/3 programs predict pathogenic. PolyPhen2 Probably Damaging 0.999. Polyphen damaging. (Edinburgh) |
130582238 |
Exon 9 |
Insertion |
c.1213_1214ins11 |
p.Leu405fs |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582245 |
Exon 9 |
Deletion |
c.1206del |
p.Lys402Asnfs*19 |
Pathogenic |
1 |
Gallione (1998) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582252 |
Exon 9 |
Deletion |
c.1199del |
p.Gly400Valfs*21 |
Pathogenic |
1 |
Cymerman (2003) Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582256 |
Exon 9 |
Deletion |
c.1195del |
p.Arg399Glyfs*22 |
Pathogenic |
4 |
Bayrak-Toydemir (2004) Bayrak-Toydemir (2006) ARUP Laboratories Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130582261 |
Exon 9 |
Duplication |
c.1190_1191dup |
p.Asp398Argfs*24 |
Pathogenic |
2 |
Lenato (2006) Giordano (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582265 |
Exon 9 |
Deletion |
c.1186del |
p.Ala396Glnfs*25 |
Pathogenic |
1 |
Cymerman (2000) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582275 |
Exon 9 |
Nonsense |
c.1176del |
p.Ser393Alafs*28 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130582282 |
Exon 9 |
Nonsense |
c.1169G>A |
p.Trp390* |
Pathogenic |
3 |
ARUP Laboratories Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582285 |
Exon 9 |
Deletion |
c.1166_1168del |
p.Phe389del |
Pathogenic |
2 |
Brusgaard (2004) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582305 |
Exon 9 |
Missense |
c.1146C>G |
p.Cys382Trp |
Pending classification |
2 |
Bayrak-Toydemir (2004) Bayrak-Toydemir (2006) Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582305 |
Exon 9 |
Nonsense |
c.1146C>A |
p.Cys382* |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130582307 |
Exon 9 |
Missense |
c.1144T>G |
p.Cys382Gly |
Uncertain |
1 |
Olivieri (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582309 |
Exon 9 |
Deletion |
c.1135del |
p.His379Ilefs*2 |
Pathogenic |
1 |
Olivieri (2018 submitted) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130582309 |
Exon 9 |
Insertion |
c.1142_1143insT |
p.Lys381Asnfs*15 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Original report is exon 9a. |
130582316 |
Exon 9-14 |
Large Deletion |
EX9_14del |
|
Pathogenic |
3 |
ARUP Laboratories |
 Clinical Features: E G P Co-segregation: mRNA study: Functional study: Comments: |
130582316 |
Exon 9-13 |
Large Deletion |
EX9_13del |
|
Pathogenic |
3 |
Shovlin (1997) Cymerman (2003) Lesca (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130582316 |
Exon 9-10 |
Large Deletion |
EX9_10del |
|
Pathogenic |
11 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130582316 |
Exon 9 |
Large Deletion |
EX9del |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130586149 |
Intron 8 |
Intronic |
c.1134+164C>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586490 |
Intron 8 |
Intronic |
c.1134+93G>T |
|
Benign |
2 |
ARUP Laboratories |
 Clinical Features: C P Co-segregation: mRNA study: Functional study: Comments: |
130586491 |
Intron 8 |
Intronic |
c.1134+92G>A |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: E G C Co-segregation: mRNA study: Functional study: Comments: |
130586529 |
Intron 8 |
Intronic |
c.1134+54C>T |
|
Pending classification |
1 |
Gedge (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported in Gedge (2007) as c.1135+54C>T. |
130586579 |
Intron 8 |
Splice Site |
c.1134+4_1134+9del |
|
Pending classification |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.1134+3_1134+8delAAGGGA |
130586582 |
Intron 8 |
Splice Site |
c.1134+1G>A |
|
Pathogenic |
2 |
Abdalla (2005) Gedge (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.1135+1G>C in Gedge (2007) |
130586583 |
Intron 8 |
Insertion/InFrame |
c.1134_1135ins220_1134 |
p.Ala378_His379 insGly74_Ala373ext |
Pathogenic |
4 |
Shovlin (1997) Bourdeau (2000) Simon(2006) Assis (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586583 |
Exon 8 |
Splice Site |
c.1134G>A |
p.Ala378Ala |
Pathogenic |
4 |
Letteboer (2005) Bossler (2006) Olivieri (2007) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: Synonymous change. 5/5 Alamut programmes give lower scores for donor splice site. (Edinburgh) |
130586593 |
Exon 8 |
Deletion |
c.1124_1125del |
p.Glu375Alafs*20 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586594 |
Exon 8 |
Nonsense |
c.1123G>T |
p.Glu375* |
Pathogenic |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586595 |
Exon 8 |
Duplication |
c.1122dup |
p.Glu375Argfs*21 |
Pathogenic |
3 |
Submitted by Edinburgh Laboratories 2013 Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.1122_1123insA; R375fs |
130586596 |
Exon 8 |
Deletion |
c.1121_1124del |
p.Lys374Serfs*6 |
Pathogenic |
1 |
Dakeishi (2002) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586596 |
Exon 8 |
Indel |
c.1121_1122delinsGC |
p.Lys374Ser |
Pathogenic |
2 |
Letteboer (2005) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: Seen as a de-novo mutation in Gedge (2007) |
130586598 |
Exon 8 |
Deletion |
c.1119_1121del |
p.Lys374del |
Uncertain |
2 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130586598 |
Exon 8 |
Deletion |
c.1119del |
p.Glu375Serfs*6 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586600 |
Exon 8 |
Insertion |
c.1117_1118insT |
p.Lys373Ilefs*23 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586605 |
Exon 8 |
Deletion |
c.1112_1134del |
p.Val371Alafs*17 |
Pathogenic |
2 |
Lesca (2004) Bayrak-Toydemir (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586606 |
Exon 8 |
Duplication |
c.1111dup |
p.Val371Glyfs*25 |
Pathogenic |
3 |
McAllister (1995) Pece (1997) Cymerman (2000) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586608 |
Exon 8 |
Missense |
c.1109T>C |
p.Leu370Pro |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130586609 |
Exon 8 |
Duplication |
c.1108dup |
p.Leu370Profs*26 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130586613 |
Exon 8 |
Deletion |
c.1104del |
p.Met368Ilefs*5 |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: E, G, T Co-segregation: mRNA study: Functional study: Comments: |
130586619 |
Exon 8 |
Deletion |
c.1098_1120del |
p.Asp366Glufs*22 |
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.1097_1119del |
130586619 |
Exon 8 |
Insertion |
c.1098_1099insT |
p.Ala367Cysfs*29 |
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586621 |
Exon 8 |
Missense |
c.1096G>C |
p.Asp366His |
Benign |
6 |
Lastella (2003) Lin (2001) Lesca (2004) Abdalla (2005) Lin (2000) Lenato (2006) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130586622 |
Exon 8 |
Silent |
c.1095C>T |
p.Asp365Asp |
Suspected Benign |
2 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586628 |
Exon 8 |
Deletion |
c.1089_1090del |
p.Ala364Argfs*31 |
Pathogenic |
1 |
Cymerman (2000) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586629 |
Exon 8 |
Missense |
c.1088G>A |
p.Cys363Tyr |
Pending classification |
2 |
Paquet (2001) Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586630 |
Exon 8 |
Missense |
c.1087T>A |
p.Cys363Ser |
Suspected Pathogenic |
3 |
Bossler (2006) Gedge (2007) Nishida (2012) ARUP Laboratories |
 Clinical Features: E T F Co-segregation: 2 individuals mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated |
130586632 |
Exon 8 |
Deletion |
c.1085del |
p.Lys362Serfs*7 |
Pathogenic |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586637 |
Exon 8 |
Deletion |
c.1080_1083del |
p.Thr361Serfs*7 |
Pathogenic |
7 |
Gallione (1998) Kuehl (2005) Wehner (2006) Bossler (2006) Olivieri (2007) ARUP Laboratories Nishida (2012) Lee (2011) |
 Clinical Features: C F Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.1078_1081delCAGA. c.1278_1281delCAGA (Kuehl (2005), PMID 15712270) |
130586639 |
Exon 8 |
Nonsense |
c.1078C>T |
p.Gln360* |
Pathogenic |
2 |
Letteboer (2005) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130586641 |
Exon 8 |
Missense |
c.1076T>C |
p.Ile359Thr |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T G P Co-segregation: mRNA study: Functional study: Mutation confirmed in affected father, brother, uncle and 1st cousin of one proband. ARUP Laboratories. Comments: |
130586657 |
Exon 8 |
Silent |
c.1060C>T |
p.Leu354Leu |
Benign |
9 |
ARUP Laboratories |
 Clinical Features: E T H P F Co-segregation: mRNA study: Functional study: Comments: |
130586662 |
Exon 8 |
Missense |
c.1055C>T |
p.Pro352Leu |
Pending classification |
1 |
Lastella (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586667 |
Exon 8 |
Nonsense |
c.1050T>A |
p.Cys350* |
Pathogenic |
4 |
McAllister (1994) McAllister (1995) Pece (1997) Letteboer (2005)
|
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586670 |
Exon 8 |
Duplication |
c.1047_1048dup |
p.Cys350Phefs*10 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586688 |
Exon 8 |
Silent |
c.1029C>T |
p.Thr343Thr |
Benign |
12 |
Shovlin (1997) Lesca (2004) Lenato (2006) ARUP Laboratories |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: |
130586698 |
Exon 8 |
Missense |
c.1019C>T |
p.Pro340Leu |
Suspected Benign |
1 |
ARUP Laboratories |
 Clinical Features: F Co-segregation: mRNA study: Functional study: Comments: |
130586707 |
Exon 8 |
Nonsense |
c.1010C>G |
p.Ser337* |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586693 |
Exon 8 |
Deletion |
c.1015_1024del |
p.Ala339Argfs*17 |
Likely Pathogenic |
1 |
Submitted by Institute of Human Genetics- Gottingen Germany |
 Clinical Features: P, T, apoplexy Co-segregation: mRNA study: Functional study: Comments: |
130586710 |
Exon 8 |
Insertion |
c.1007_1008insG |
p.Ser337Leufs*15 |
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586718 |
Exon 8 |
Silent |
c.999G>A |
p.Arg333Arg |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586720 |
Exon 8 |
Deletion |
c.997_1001del |
p.Arg333Alafs*17 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130586722 |
Exon 8 |
Deletion |
c.995del |
p.Gly332Valfs*27 |
Pathogenic |
2 |
Letteboer (2005) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130586724 |
Exon 8 |
Deletion |
c.993_1134del |
p.Gly332Ilefs*2 |
Pathogenic |
1 |
Shovlin (1997) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586726 |
Intron 7 |
Splice Site |
c.992-1G>A |
|
Pathogenic |
2 |
Lesca (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: T P Co-segregation: mRNA study: Functional study: Comments: Reported as c.991-1G>A |
130586727 |
Intron 7 |
Splice Site |
c.992-2A>G |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586728 |
Intron 7 |
Splice Site |
c.992-3C>G |
|
Pathogenic |
1 |
Nishida (2012) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130586750 |
Exon 8 |
Large Deletion |
EX8del |
|
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.992-25_1120del152, this deleted Exon 8 into Exon 9. |
130587021 |
Intron 7 |
Intronic |
c.991+58A>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587057 |
Intron 7 |
Intronic |
c.991+22_991+26dup |
|
Benign |
2 |
Lesca (2004) Lenato (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.992+26insCTCCC |
130587058 |
Intron 7 |
Intronic |
c.991+21_991+26dup |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130587077 |
Intron 7 |
Splice Site |
c.991+2T>G |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587078 |
Intron 7 |
Splice Site |
c.991+1del |
|
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: E, T, F Co-segregation: mRNA study: Functional study: Comments: |
130587079 |
Exon 7 |
Missense |
c.991G>A |
p.Gly331Ser |
Pathogenic |
7 |
Letteboer (2005) Bossler (2006) Gedge (2007) ARUP Laboratories Nishida (2012) McDonald (2009) |
 Clinical Features: E T P F Co-segregation: Affected father mRNA study: Functional study: Comments: |
130587080 |
Exon 7 |
Deletion |
c.990del |
p.Cys330Trpfs*29 |
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587091 |
Exon 7 |
Duplication |
c.979_982dup |
p.Ser328Cysfs*7 |
Pathogenic |
1 |
Prigoda (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587102 |
Exon 7 |
Duplication |
c.968dup |
p.Ser324Leufs*10 |
Pathogenic |
4 |
Shovlin (1997) Harrison (2003) Bayrak-Toydemir (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: E P F Co-segregation: mRNA study: Functional study: Comments: |
130587103 |
Exon 7 |
Deletion |
c.967_968del |
p.Val323Leufs*10 |
Pathogenic |
1 |
Fernandez (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587117 |
Exon 7 |
Missense |
c.953C>T |
p.Pro318Leu |
Uncertain |
1 |
Personal communication with Jennifer Thomson (Yorkshire Regional Genetics Service, Chapel Allerton Hospital, Leeds, UK) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587117 |
Exon 7 |
Duplication |
c.953dup |
p.Leu319Alafs*15 |
Pathogenic |
1 |
Prigoda (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587138 |
Exon 7 |
Missense |
c.932T>G |
p.Val311Gly |
Pending classification |
1 |
Karabegovic (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587147 |
Exon 7 |
Missense |
c.923C>A |
p.Ala308Asp |
Suspected Pathogenic |
4 |
Bossler (2006) Prigoda (2006) Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587153 |
Exon 7 |
Missense |
c.917T>C |
p.Leu306Pro |
Pending classification |
3 |
Gallione (1998) Letteboer (2005) Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587162 |
Exon 7 |
Missense |
c.908C>A |
p.Ala303Asp |
Uncertain |
1 |
IMPACT Genetics |
 Clinical Features: E, T Co-segregation: mRNA study: Functional study: Comments: |
130587163 |
Exon 7 |
Duplication |
c.907dup |
p.Ala303Glyfs*31 |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130587165 |
Exon 7 |
Deletion |
c.905_915del |
p.Glu302Alafs*28 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587166 |
Exon 7 |
Nonsense |
c.904G>T |
p.Glu302* |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: T Co-segregation: mRNA study: Functional study: Comments: |
130587167 |
Exon 7 |
Duplication |
c.903_904dup |
p.Glu302Glyfs*58 |
Pathogenic |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.904_905insGG |
130587171 |
Exon 7 |
Missense |
c.899T>C |
p.Leu300Pro |
Pathogenic |
4 |
Gedge (2007) Bayrak-Toydemir (2008) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.01 NOT tolerated |
130587174 |
Exon 7 |
Deletion |
c.896_1082del |
p.Leu299Glnfs*8 |
Pathogenic |
1 |
Prigoda (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Deletes 186 bp starting in exon 7 and deleting the exon 7 3' splice site will cause exon skipping, frameshift and termination codon. |
130587177 |
Exon 7 |
Deletion |
c.893del |
p.Gly298Alafs*61 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587180 |
Exon 7 |
Missense |
c.890A>C |
p.Gln297Pro |
Suspected Benign |
1 |
ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: Based on segregation study in one family |
130587181 |
Exon 7 |
Nonsense |
c.889C>T |
p.Gln297* |
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587182 |
Exon 7 |
Indel |
c.888_918delinsAAGCTCCCAG |
p.Gln297_Leu306delins
SerSerGln |
Pending classification |
2 |
Letteboer (2005) Lastres (1994) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587188 |
Exon 7 |
Deletion |
c.882_920del |
p.Thr295_Asn307del |
Pending classification |
2 |
McAllister (1994) Lastres (1994) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587192 |
Exon 7 |
Duplication |
c.878dup |
p.Asp294Argfs*40 |
Pathogenic |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587195 |
Exon 7 |
Missense |
c.875T>A |
p.Leu292His |
Uncertain |
2 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130587198 |
Exon 7 |
Deletion |
c.872_883del |
p.Lys291_Asp294del |
Suspected Pathogenic |
4 |
Gedge (2007) ARUP Laboratories Delaney (2012) |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130587206 |
Exon 7 |
Deletion |
c.864del |
p.Gly289Alafs*70 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587235 |
Exon 7 |
Deletion |
c.835_837del |
p.Phe279del |
Pending classification |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587236 |
Exon 7 |
Deletion |
c.834_837del |
p.Phe279Argfs*79 |
Pathogenic |
1 |
Fernandez (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587236 |
Exon 7 |
Duplication |
c.834dup |
p.Phe279Leufs*55 |
Pathogenic |
1 |
Fernandez (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587239 |
Exon 7 |
Nonsense |
c.831C>G |
p.Tyr277* |
Pathogenic |
2 |
McAllister (1994) Lastres (1994) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587242 |
Exon 7 |
Duplication |
c.828dup |
p.Tyr277Ilefs*57 |
Pathogenic |
1 |
Dakeishi (2002) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587248 |
Exon 7 |
Deletion |
c.822_823del |
p.Gly275Argfs*58 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587249 |
Exon 7 |
Missense |
c.821C>T |
p.Thr274Ile |
Pending classification |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587250 |
Exon 7 |
Indel |
c.820_826delins14 |
p.Thr274Leufs*62 |
Pathogenic |
1 |
Cymerman (2000) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587253 |
Exon 7-8 |
Large Deletion |
EX7_8del |
Deletion Exon 7-9 |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: Deletion Exon 7-8 |
130587253 |
Exon 7-8 |
Large Deletion |
EX7-8del |
p.Thr273_Ala378del |
Pathogenic |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.817_1134delinsTAAAC (g.IVS6+140_IVS8+20>TAACC) |
130587254 |
Intron 6 |
Splice Site |
c.817-1G>C |
|
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587254 |
Intron 6 |
Splice Site |
c.817-1G>T |
|
Pathogenic |
1 |
Fodstad (2011) |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587255 |
Intron 6 |
Splice Site |
c.817-2A>T |
|
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587256 |
Intron 6 |
Splice Site |
c.817-3T>G |
|
Pending classification |
1 |
Torring (2012) |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587260 |
Intron 6 |
Splice Site |
c.817-7C>G |
|
Pending classification |
1 |
Prigoda (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Confirmed by RNA: created a criptic AG site which inserts 6bases into transcript, the second codon inserted is a stop codon. |
130587280 |
Intron 6 |
Intronic |
c.817-27_817-26del |
|
Pending classification |
1 |
Gedge (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587332 |
Intron 6 |
Intronic |
c.817-79C>A |
|
Benign |
4 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: C Co-segregation: mRNA study: Functional study: Comments: |
130587505 |
Intron 6 |
Splice Site |
c.816+5G>C |
|
Suspected Pathogenic |
1 |
Olivieri (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587508 |
Intron 6 |
Splice Site |
c.816+2T>C |
|
Pathogenic |
2 |
Schulte (2005) Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587508 |
Intron 6 |
Splice Site |
c.816+2T>A |
|
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587509 |
Intron 6 |
Splice Site |
c.816+1G>A |
|
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587510 |
Exon 6 |
Nonsense |
c.816G>A |
p.Trp272* |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130587511 |
Exon 6 |
Nonsense |
c.815G>A |
p.Trp272* |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130587514 |
Exon 6 |
Missense |
c.812T>A |
p.Ile271Asn |
Pending classification |
2 |
Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587518 |
Exon 6 |
Nonsense |
c.808C>T |
p.Gln270* |
Pathogenic |
2 |
Torring (2014) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587527 |
Exon 6 |
Duplication |
c.799_805dup |
p.Met269Thrfs*67 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587536 |
Exon 6 |
Missense |
c.790G>A |
p.Asp264Asn |
Uncertain |
1 |
Letteboer (2005) Lenato (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587538 |
Exon 6 |
Missense |
c.788T>C |
p.Ile263Thr |
Uncertain |
1 |
Lesca (2004) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587539 |
Exon 6 |
Deletion |
c.787_789del |
p.Ile263del |
Pending classification |
5 |
Lesca (2004) Letteboer (2005) Kuehl (2005) Bossler (2006) Lesca (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587541 |
Exon 6 |
Deletion |
c.785_789del |
p.Leu262Argfs*70 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587544 |
Exon 6 |
Nonsense |
c.782G>A |
p.Trp261* |
Pathogenic |
2 |
Paquet (2001) Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587545 |
Exon 6 |
Missense |
c.781T>C |
p.Trp261Arg |
Pending classification |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587546 |
Exon 6 |
Insertion |
c.780_781ins8 |
p.Ser260fs |
Pathogenic |
1 |
Olivieri (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.780ins8 |
130587548 |
Exon 6 |
Missense |
c.778T>C |
p.Ser260Pro |
Pending classification |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587551 |
Exon 6 |
Deletion |
c.775del |
p.Val259Cysfs*100 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587552 |
Exon 6 |
Nonsense |
c.774C>A |
p.Tyr258* |
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587552 |
Exon 6 |
Nonsense |
c.774C>G |
p.Tyr258* |
Pathogenic |
1 |
Olivieri (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587553 |
Exon 6 |
Indel |
c.773_776delinsGCAGGGTC |
p.Tyr258Cysfs*77 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130587554 |
Exon 6 |
Insertion |
c.772_773insC |
p.Tyr258Serfs*76 |
Pathogenic |
1 |
Lesca (2004) Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587554 |
Exon 6 |
Deletion |
c.772del |
p.Tyr258Thrfs*101 |
Pathogenic |
4 |
Fernandez (2006) Olivieri (2007) ARUP Laboratories Nishida (2012) |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130587555 |
Exon 6 |
Deletion |
c.771del |
p.Tyr258Thrfs*101 |
Pathogenic |
3 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130587555 |
Exon 6 |
Duplication |
c.771dup |
p.Tyr258Leufs*76 |
Pathogenic |
5 |
ARUP Laboratories Lesca (2004) Lenato (2006) Fontalba (2008) Letteboer (2005) |
 Clinical Features: E G Co-segregation: mRNA study: Functional study: Comments: |
130587566 |
Exon 6 |
Nonsense |
c.760C>T |
p.Gln254* |
Pathogenic |
1 |
IMPACT Genetics ARUP Laboratories |
 Clinical Features: E, T, G, F Co-segregation: E,T, TIA, confirmed+ in 1 affected and - in 1 NA mRNA study: Functional study: Comments: |
130587566 |
Exon 6 |
Duplication |
c.760dup |
p.Gln254Profs*80 |
Pathogenic |
1 |
Submitted by Dezan, M / Immunohematology Division, Fundação Pró-Sangue, Hemocentro de São Paulo |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587574 |
Exon 6 |
Missense |
c.752T>G |
p.Leu251Arg |
Pending classification |
1 |
IMPACT Genetics |
 Clinical Features: Co-segregation: confirmed + in 1 affected and - in 1 NA mRNA study: Functional study: Comments: SIFT, Polyphen, PMUT and Panther predict damaging |
130587575 |
Exon 6 |
Deletion |
c.751_753del |
p.Leu251del |
Pending classification |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587583 |
Exon 6 |
Deletion |
c.743del |
p.Asp248Valfs*111 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T G F Co-segregation: mRNA study: Functional study: Comments: |
130587586 |
Exon 6 |
Deletion |
c.740del |
p.Leu247Profs*112 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587590 |
Exon 6 |
Deletion |
c.736del |
p.Asp246Ilefs*113 |
Pathogenic |
3 |
Cymerman (2003) Bossler (2006) Letteboer (2005) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Also reported as c.733delG; p.G245fs |
130587600 |
Exon 6 |
Nonsense |
c.726C>A |
p.Cys242* |
Pathogenic |
3 |
ARUP Laboratories McDonald (2009) |
 Clinical Features: E T H F Co-segregation: Affected pat uncle (McDonald 2009). mRNA study: Functional study: Comments: |
130587605 |
Exon 6 |
Deletion |
c.721_725del |
p.Ser241Argfs*91 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T C F Co-segregation: mRNA study: Functional study: Comments: |
130587610 |
Exon 6 |
Insertion |
c.716_717insG |
p.Leu240Thrfs*94 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587611 |
Exon 6 |
Nonsense |
c.715G>T |
p.Glu239* |
Pathogenic |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587611 |
Exon 6 |
Duplication |
c.715dup |
p.Glu239Glyfs*95 |
Pathogenic |
2 |
Bossler (2006) Prigoda (2006) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587613 |
Exon 6 |
Missense |
c.713T>A |
p.Val238Glu |
Uncertain |
2 |
ARUP Laboratories Richards-Yutz (2010) |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130587622 |
Exon 6 |
Deletion |
c.704del |
p.Thr235Argfs*2 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587625 |
Exon 6 |
Insertion |
c.701_702insACGG |
p.Thr235Argfs*100 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587632 |
Exon 6 |
Deletion |
c.694_699del |
p.Arg232_Thr233del |
Pending classification |
2 |
Lesca (2004) ARUP Laboratories |
 Clinical Features: E H P Co-segregation: mRNA study: Functional study: Comments: |
130588816 |
Exon 6 |
Large Deletion |
EX6del |
|
Pathogenic |
1 |
Mutize (2020) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Family carried deletion in exon 6 (c.(690?_816+?del] p.[ (?)] that accompanied a nonpathogenic duplication of exons 3–4 (c.[220-?_523+?dup] p.[(?)]). |
130587637 |
Intron 5 |
Splice Site |
c.690-1G>A |
|
Pathogenic |
2 |
Argyriou(2006) ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130587638 |
Intron 5 |
Splice Site |
c.690-2A>T |
|
Pathogenic |
3 |
Cymerman (2000) Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Removes 3' acceptor site according to all 4 splicing softwares. (Edinburgh) |
130587908 |
Intron 5 |
Intronic |
c.689+66dup |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587972 |
Intron 5 |
Splice Site |
c.689+2T>C |
|
Pathogenic |
2 |
Lesca (2004) Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587981 |
Exon 5 |
Deletion |
c.682_686del |
p.Ser228Argfs*104 |
Pathogenic |
1 |
Harrison (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130587989 |
Exon 5 |
Missense |
c.674C>T |
p.Pro225Leu |
Uncertain |
2 |
ARUP Laboratories McDonald (2009) |
 Clinical Features: E T F Co-segregation: Mother with recurrent epistaxis (McDonald 2009). mRNA study: Functional study: Comments: |
130588001 |
Exon 5 |
Deletion |
c.667del |
p.Val223Serfs*12 |
Pathogenic |
2 |
ARUP Laboratories Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.665delG |
130588001 |
Exon 5 |
Missense |
c.662T>C |
p.Leu221Pro |
Pathogenic |
7 |
Pece-Barbara (1999) Schulte (2005) Kuehl (2005) Bossler (2006) Gedge (2007) ARUP Laboratories Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P F Co-segregation: 4 individuals mRNA study: Functional study: Comments: |
130588004 |
Exon 5 |
Indel |
c.659_660delinsAT |
p.Ile220Asn |
Suspected pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: |
130588004 |
Exon 5 |
Missense |
c.659T>C |
p.Ile220Thr |
Pathogenic |
4 |
Bossler (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.01 NOT tolerated |
130588004 |
Exon 5 |
Missense |
c.659T>A |
p.Ile220Asn |
Pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: C F Co-segregation: mRNA study: Functional study: Comments: Patient has intracranial hemorrhage due to large AVM. Two other vascular lesions seen on MRI. Her father has epistaxis and telangiectasia. |
130588006 |
Exon 5 |
Deletion |
c.657_658del |
p.Ile220Profs*113 |
Pathogenic |
1 |
Bourdeau (2000) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588010 |
Exon 5 |
Duplication |
c.653dup |
p.His219Alafs*115 |
Pathogenic |
2 |
Bossler (2006) Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588016 |
Exon 5 |
Deletion |
c.647del |
p.Lys216Argfs*6 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588017 |
Exon 5 |
Missense |
c.646A>G |
p.Lys216Glu |
Pending classification |
4 |
Fontalba (2008) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Possible mutation. Query mosaic in affected patient. Mosaic mutation in this family (Edinburgh). Previously reported as p.K216Q. |
130588019 |
Exon 5 |
Deletion |
c.644del |
p.His215Profs*7 |
Pathogenic |
1 |
Argyriou(2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588023 |
Exon 5 |
Deletion |
c.640_643del |
p.Gly214Thrfs*7 |
Pathogenic |
2 |
Bayrak-Toydemir (2004) Bayrak-Toydemir (2006) Bossler (2006) ARUP Laboratories |
 Clinical Features: C Co-segregation: mRNA study: Functional study: Comments: |
130588023 |
Exon 5 |
Missense |
c.640G>A |
p.Gly214Ser |
Pathogenic |
|
Personal communication with Dr. Michelle Letartte (SickKids PGCRL) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Patient with PAVM, CAVM, telangiectasia. No family history and no mutation in parents. Patient has developmental delay, microcephaly, hypothyroidism (Letartte) |
130588037 |
Exon 5 |
Nonsense |
c.626T>A |
p.Leu209* |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130588042 |
Exon 5 |
Deletion |
c.619_621del |
p.Cys207del |
Pending classification |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588043 |
Exon 5 |
Missense |
c.620G>A |
p.Cys207Tyr |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588046 |
Exon 5 |
Deletion |
c.617delG |
p.Gly206Alafs*16 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588049 |
Exon 5 |
Missense |
c.614G>C |
p.Arg205Pro |
Pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: Found in 5 affected family members (proband, 2 first-degree and 2 second-degree relatives) mRNA study: Functional study: Comments: Absent from controls (Genome Aggregation Database) |
130588059 |
Exon 5 |
Indel |
c.604_607delinsCCC |
p.Ala202Profs*20 |
Pathogenic |
4 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588068 |
Exon 5 |
Duplication |
c.595_596dup |
p.Thr200Valfs*23 |
Pathogenic |
1 |
Bayrak-Toydemir (2004) Bayrak-Toydemir (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588069 |
Exon 5 |
Deletion |
c.594_622del |
p.Arg199Leufs*125 |
Pathogenic |
2 |
Lastella (2003) Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588070 |
Exon 5 |
Missense |
c.593C>T |
p.Pro198Leu |
Uncertain |
3 |
ARUP Laboratories McDonald (2009) |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: add multipl mutation paper Comments: |
130588072 |
Exon 5 |
Deletion |
c.591del |
p.Pro198Argfs*24 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E G C Co-segregation: mRNA study: Functional study: Comments: |
130588073 |
Exon 5 |
Missense |
c.590G>C |
p.Arg197Pro |
Pending classification |
2 |
Olivieri (2007) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588073 |
Exon 5 |
Missense |
c.590G>A |
p.Arg197Gln |
Pending classification |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588074 |
Exon 5 |
Missense |
c.589C>T |
p.Arg197Trp |
Pending classification |
1 |
IMPACT Genetics |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588075 |
Exon 5 |
Nonsense |
c.588G>A |
p.Trp196* |
Pathogenic |
2 |
Cymerman (2003) ARUP Laboratories |
 Clinical Features: E F Co-segregation: mRNA study: Functional study: Comments: |
130588076 |
Exon 5 |
Nonsense |
c.587G>A |
p.Trp196* |
Pathogenic |
3 |
McAllister (1995) Cymerman (2000) Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588077 |
Exon 5 |
Deletion |
c.586_604del |
p.Trp196Profs*20 |
Pathogenic |
1 |
Abdalla (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Hepatic and liver shunts. |
130588077 |
Exon 5 |
Missense |
c.586T>C |
p.Trp196Arg |
Pathogenic |
1 |
Bayrak-Toydemir (2004) Bayrak-Toydemir (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588082 |
Exon 5 |
Deletion |
c.581_592del |
p.Leu194_Arg197del |
Pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E P F Co-segregation: Variant was identified in 2 affected relatives of the proband (1 first-degree, 1 second-degree), and was absent from an unaffected relative (second-degree). mRNA study: Functional study: Comments: |
130588082 |
Exon 5 |
Missense |
c.581T>C |
p.Leu194Pro |
Uncertain |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588083 |
Exon 5 |
Deletion |
c.580_596del |
p.Leu194Tyrfs*134 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130588085 |
Exon 5 |
Deletion |
c.578_596del |
p.Thr193Ilefs*23 |
Pathogenic |
1 |
Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588086 |
Exon 5 |
Indel |
c.577_582delinsGTACTCCAG |
p.Thr193delinsSerThrProAla |
Pending classification |
1 |
Argyriou(2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Previously reported as p.T193_L194del VLQins |
130588086 |
Exon 5 |
Duplication |
c.577_580dup |
p.Leu194Hisfs*141 |
Pathogenic |
2 |
Cymerman (2000) ARUP Laboratories |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: |
130588086 |
Exon 5 |
Insertion |
c.577_578insGC |
p.Thr193Serfs*30 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588087 |
Exon 5 |
Deletion |
c.576_596del |
p.Leu194_Thr200del |
Pathogenic |
1 |
Shovlin (1997) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588089 |
Exon 5 |
Deletion |
c.574del |
p.Arg192Alafs*30 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588091 |
Exon 5 |
Missense |
c.572G>A |
p.Gly191Asp |
Benign |
6 |
Lesca (2004) Abdalla (2005) Lenato (2006) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P H F Co-segregation: mRNA study: Functional study: Comments: |
130588099 |
Exon 5 |
Duplication |
c.562dup |
p.Gln188Profs*146 |
Pathogenic |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Reported as c.562_563insC |
130588126 |
Exon 5 |
Deletion |
c.537_538del |
p.Ser180Leufs*153 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588137 |
Exon 5 |
Nonsense |
c.526C>T |
p.Gln176* |
Pathogenic |
3 |
Olivieri (2007) ARUP Laboratories |
 Clinical Features: E G F Co-segregation: mRNA study: Functional study: Comments: |
130588139 |
Exon 5 |
Large Deletion |
EX5del |
|
Pathogenic |
2 |
Cymerman (2003) ARUP Laboratories |
 Clinical Features: E C F Co-segregation: mRNA study: Functional study: Comments: Author published as: c.524_689del p.Ala175fs |
130588140 |
Intron 4 |
Splice Site |
c.524-1G>A |
|
Pathogenic |
3 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130588141 |
Intron 4 |
Splice Site |
c.524-2A>G |
|
Pathogenic |
5 |
Gallione (1998) Bayrak-Toydemir (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T C H P F Co-segregation: mRNA study: Functional study: Comments: |
130588154 |
Intron 4 |
Intronic |
c.524-15C>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588787 |
Exon 4 |
Missense |
c.512G>C |
p.Arg171Pro |
Pathogenic |
2 |
ARUP Laboratories |
 Co-segregation: Identified in a fourth degree relative and a fifth degree relative of the proband, both with clinical diagnoses of HHT. |
130588788 |
Exon 4 |
Splice Site |
c.523G>C |
p.Ala175Pro |
Pending classification |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Author published as: p.Asn121fs |
130588789 |
Exon 4 |
Splice Site |
c.523G>A |
p.Ala175Thr |
Pathogenic |
2 |
Bossler (2006) Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588801 |
Exon 4 |
Nonsense |
c.511C>T |
p.Arg171* |
Pathogenic |
14 |
Shovlin (1997) Lastella (2003) Lesca (2004) Berg (2003) Fernandez (2005) Sanz-Rodriguez (2004) Lenato (2006) Bayrak-Toydemir (2006) Fernandez (2006) Bossler (2006) ARUP Laboratories Lee (2011) submitted by Edinburgh |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130588810 |
Exon 4 |
Missense |
c.502A>T |
p.Ile168Phe |
Uncertain |
|
Personal communication with Dr. Silvana Penco from Niguarda Ca'Granda Hospitl, Milan Italy |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Patient with PAVM, CAVM, no family history. |
130588815 |
Exon 4 |
Insertion |
c.497_498insC |
p.Gln166Hisfs*168 |
Pathogenic |
2 |
Letteboer (2005) ARUP Laboratories |
 Clinical Features: E T H P Co-segregation: mRNA study: Functional study: Comments: |
130588816 |
Exon 4 |
Duplication |
c.496dup |
p.Gln166Profs*168 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588816 |
Exon 4 |
Deletion |
c.496del |
p.Gln166Argfs*56 |
Pathogenic |
3 |
Lesca (2004) Mutize (2020) ARUP Laboratories |
 Clinical Features: E T G F Co-segregation: mRNA study: Functional study: Comments: |
130588817 |
Exon 4 |
Deletion |
c.495_496del |
p.Gln166Glufs*167 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588818 |
Exon 4 |
Deletion |
c.494_501del |
p.Pro165Hisfs*166 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588818 |
Exon 4 |
Missense |
c.494C>T |
p.Pro165Leu |
Pending classification |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588818 |
Exon 4 |
Missense |
c.494C>G |
p.Pro165Arg |
Uncertain |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T C Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.01 NOT tolerated |
130588819 |
Exon 4 |
Missense |
c.493C>T |
p.Pro165Ser |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130588833 |
Exon 4 |
Missense |
c.479C>A |
p.Ala160Asp |
Pending classification |
1 |
Yamaguchi (1997) Paquet (2001) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588834 |
Exon 4 |
Missense |
c.478G>C |
p.Ala160Pro |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Sift and PolyPhen2 (0.984) predict deleterious. pAla160Asp known to be pathogenic. (Edinburgh) |
130588841 |
Exon 4 |
Deletion |
c.471_472del |
p.Ser158Cysfs*3 |
Pathogenic |
3 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T C Co-segregation: mRNA study: Functional study: Comments: |
130588851 |
Exon 4 |
Deletion |
c.461del |
p.Gly154Alafs*9 |
Pathogenic |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588855 |
Exon 4 |
Deletion |
c.457del |
p.Arg153Glyfs*10 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588865 |
Exon 4 |
Missense |
c.447G>C |
p.Trp149Cys |
Pathogenic |
7 |
Gallione (1998) Bourdeau (2000) Bossler (2006) ARUP Laboratories Nishida (2012) |
 Clinical Features: E T G P F Co-segregation: 3 individuals mRNA study: Functional study: Comments: |
130588865 |
Exon 4 |
Nonsense |
c.447G>A |
p.Trp149* |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588866 |
Exon 4 |
Missense |
c.446G>C |
p.Trp149Ser |
Uncertain |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated |
130588890 |
Exon 4 |
Deletion |
c.422del |
p.Phe141Serfs*22 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130588915 |
Exon 4 |
Duplication |
c.397dup |
p.Val133Glyfs*16 |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: E, T, P, F Co-segregation: mRNA study: Functional study: Comments: |
130588915 |
Exon 4 |
Deletion |
c.397del |
p.Val133Serfs*30 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588919 |
Exon 4 |
Silent |
c.393G>C |
p.Pro131Pro |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: No predicted effect on splicing. (Edinburgh) |
130588920 |
Exon 4 |
Deletion |
c.392del |
p.Pro131Argfs*32 |
Pathogenic |
2 |
Wehner (2006) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588920 |
Exon 4 |
Missense |
c.392C>T |
p.Pro131Leu |
Benign |
8 |
Cymerman (2003) Letteboer (2005) Abdalla (2005) Brusgaard (2004) Kjeldsen (2005) Fernandez (2006) ARUP Laboratories Fontalba (2008) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T G P Co-segregation: mRNA study: Functional study: get the article from print out add ref Comments: Variant has been found in unaffected individuals and in affected individuals with an additional pathogenic mutation. PolyPhen 2, SIFT and Mutation Taster predict it is benign. |
130588924 |
Exon 4 |
Missense |
c.388C>T |
p.Pro130Ser |
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Weakly conserved. Pt has a pathogenic variant in ACVRL1. (Edinburgh) |
130588924 |
Exon 4 |
Missense |
c.388C>A |
p.Pro130Thr |
Pending classification |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588938 |
Exon 4 |
Missense |
c.374T>C |
p.Val125Ala |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: E P Co-segregation: mRNA study: Functional study: Comments: |
130588938 |
Exon 4 |
Missense |
c.374T>A |
p.Val125Asp |
Pathogenic |
3 |
Paquet (2001) Bossler (2006) Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588942 |
Exon 4 |
Deletion |
c.370del |
p.Leu124Trpfs*39 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588951 |
Exon 4-7 |
Large Deletion |
EX4_7del |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E G P F Co-segregation: mRNA study: Functional study: Comments: Deletion Exon 4-7 |
130588951 |
Exon 4-6 |
Large Deletion |
EX4_6del |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: c.361-?_816+?del |
130588952 |
Intron 3 |
Large Deletion |
c.361-?_523+?del |
Deletion Exon 5 |
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588953 |
Intron 3 |
Splice Site |
c.361-2A>G |
|
Pathogenic |
2 |
Shovlin (1997) Brusgaard (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588953 |
Intron 3 |
Splice Site |
c.361-2A>C |
|
Pathogenic |
1 |
Kjeldsen (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130588965 |
Intron 3 |
Deletion |
c.361-14del188 |
|
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130589042 |
Intron 3 |
Intronic |
c.361-91del |
|
Pending classification |
1 |
Shoukier(2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130589060 |
Intron 3 |
Intronic |
c.361-109_361-106del |
|
Benign |
1 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Found with pathogenic p.Leu572* variant. Previous reported as c.361-113.109delTTCT |
130591875 |
Intron 3 |
Intronic |
c.360+91C>T |
|
Benign |
2 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130591945 |
Intron 3 |
Intronic |
c.360+21C>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591961 |
Intron 3 |
Splice Site |
c.360+5G>T |
|
Pending classification |
1 |
Lux (2013) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591961 |
Intron 3 |
Splice Site |
c.360+5G>A |
|
Suspected Pathogenic |
2 |
Letteboer (2005) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591961 |
Intron 3 |
Splice Site |
c.360+5G>C |
|
Suspected Pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E C F Co-segregation: mRNA study: Functional study: Comments: |
130591962 |
Intron 3 |
Splice Site |
c.360+4_360+7del |
|
Pathogenic |
3 |
ARUP Laboratories Gedge (2007) Olivieri (2007) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: Abnormal RNA species confirmed. |
130591962 |
Intron 3 |
Splice Site |
c.360+4A>G |
|
Pending classification |
2 |
Shovlin (1997) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Author published as: p.Gly74_Tyr120del |
130591963 |
Intron 3 |
Duplication |
c.360+3dup |
|
Pending classification |
1 |
Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591965 |
Intron 3 |
Splice Site |
c.360+1G>T |
|
pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: P, E, T Co-segregation: mRNA study: Functional study: Comments: |
130591965 |
Intron 3 |
Splice Site |
c.360+1del |
|
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591965 |
Intron 3 |
Splice Site |
c.360+1G>C |
|
Pathogenic |
1 |
Dakeishi (2002) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591965 |
Intron 3 |
Splice Site |
c.360+1G>A |
|
Pathogenic |
14 |
Pece (1997) Cymerman (2000) Cymerman (2003) Letteboer (2005) Bayrak-Toydemir (2004) Schulte (2005) Bayrak-Toydemir (2006) Bossler (2006) Olivieri (2007) ARUP Laboratories Kim(2011) Nishida (2012) Submitted by Edinburgh Laboratories (2013) |
 Clinical Features: E C P T Co-segregation: 5 individuals, 3 individuals mRNA study: Functional study: Comments: |
130591966 |
Exon 3 |
Silent |
c.360C>T |
p.Tyr120Tyr |
Suspected Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591966 |
Exon 3 |
Nonsense |
c.360C>A |
p.Tyr120* |
Pathogenic |
3 |
Brusgaard (2004) Kjeldsen (2005) ARUP Laboratories |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: |
130591982 |
Exon 3 |
Deletion |
c.344del |
p.Pro115Hisfs*48 |
Pathogenic |
1 |
Argyriou(2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591988 |
Exon 3 |
Deletion |
c.338del |
p.Gly113Glufs*50 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591994 |
Exon 3 |
Deletion |
c.332_338del |
p.Ala111Glufs*50 |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591995 |
Exon 3 |
Missense |
c.331G>A |
p.Ala111Thr |
Uncertain |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130591998 |
Exon 3 |
Nonsense |
c.328C>T |
p.Gln110* |
Pathogenic |
|
Personal communication with the Department of Genetics School of Medicine University of Pennsylvania |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592000 |
Exon 3 |
Deletion |
c.326_327del |
p.Leu109Profs*39 |
Pathogenic |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592002 |
Exon 3 |
Duplication |
c.324dup |
p.Leu109Serfs*40 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592006 |
Exon 3 |
Missense |
c.320T>G |
p.Leu107Arg |
Pending classification |
1 |
Lesca (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592012 |
Exon 3 |
Missense |
c.314T>A |
p.Val105Asp |
Pending classification |
2 |
Bossler (2006) Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592017 |
Exon 3 |
Deletion |
c.309_311del |
p.Ser104del |
Pathogenic |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592036 |
Exon 3 |
Missense |
c.290T>G |
p.Leu97Arg |
Pathogenic |
3 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.01 NOT tolerated |
130592039 |
Exon 3 |
Missense |
c.287T>C |
p.Leu96Pro |
Pending classification |
1 |
Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592049 |
Exon 3 |
Deletion |
c.277del |
p.Arg93Glufs*9 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592049 |
Exon 3 |
Nonsense |
c.277C>T |
p.Arg93* |
Pathogenic |
14 |
Cymerman (2000) Letteboer (2005) Brusgaard (2004) Bossler (2006) Lesca (2006) Olivieri (2006) Gedge (2007) Olivieri (2007) ARUP Laboratories Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T C P F Co-segregation: mRNA study: Functional study: Comments: |
130592053 |
Exon 3 |
Nonsense |
c.273G>A |
p.Trp91* |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: E, T, F Co-segregation: mRNA study: Functional study: Comments: |
130592053 |
Exon 3 |
Indel |
c.273_274delinsAA |
p.Trp91* |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130592056 |
Exon 3 |
Duplication |
c.270dup |
p.Trp91Leufs*58 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592068 |
Exon 3 |
Duplication |
c.258_276dup |
p.Arg93Alafs*62 |
Pathogenic |
1 |
Brusgaard (2004) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592079 |
Exon 3 |
Nonsense |
c.247C>T |
p.Gln83* |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592092 |
Exon 3 |
Silent |
c.234G>A |
p.Leu78Leu |
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592097 |
Exon 3 |
Nonsense |
c.229C>T |
p.Gln77* |
Pathogenic |
8 |
Lastella (2003) Brusgaard (2004) Abdalla (2003) Bayrak-Toydemir (2004) Zhang (2004) Dakeishi (2002) Sanz-Rodriguez (2004) Lenato (2006) Prigoda (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130592101 |
Exon 3 |
Silent |
c.225G>A |
p.Pro75Pro |
Benign |
2 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130592102 |
Exon 3 |
Deletion |
c.224del |
p.Pro75Argfs*6 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E F Co-segregation: mRNA study: Functional study: Comments: |
130592106 |
Exon 3-8 |
Large Duplication |
EX3_8dup |
|
Pathogenic |
2 |
Bourdeau (2000) Mutize (2020) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: De novo mutation in a newborn with 2 fatal CAVM (Letartte) |
130592106 |
Exon 3-8 |
Large Deletion |
EX3_8del |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E F Co-segregation: mRNA study: Functional study: Comments: |
130592106 |
Exon 3-4 |
Large Deletion |
EX3_4del |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E G P Co-segregation: mRNA study: Functional study: Comments: |
130592106 |
Exon 3 |
Large Duplication |
EX3dup |
|
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130592106 |
Exon 3 |
Large Deletion |
EX3del |
|
Pathogenic |
1 |
ARUP Laboratories Bossler (2006) |
 Clinical Features: E T H F Co-segregation: mRNA study: Functional study: Comments: c.220-?_360+?del |
130592107 |
Intron 2 |
Splice Site |
c.220-18C>A |
|
Pending classification |
1 |
Personal communication with UPenn |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Mild HHT, 4 Curacao criteria met |
130592108 |
Intron 2 |
Splice Site |
c.220-2A>G |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T C H P Co-segregation: mRNA study: Functional study: Comments: |
130605348 |
Intron 2 |
Intronic |
c.219+25G>T |
|
Benign |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605348 |
Intron 2 |
Intronic |
c.219+25G>A |
|
Benign |
1 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605351 |
Intron 2 |
Intronic |
c.219+22_219+23delinsGA |
|
Suspected Benign |
1 |
ARUP Laboratories Gedge (2007) |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130605351 |
Intron 2 |
Intronic |
c.219+22C>T |
|
Benign |
1 |
Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605368 |
Intron 2 |
Splice Site |
c.219+5G>C |
|
Pending classification |
1 |
Lesca (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605372 |
Intron 2 |
Splice Site |
c.219+1G>T |
|
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605373 |
Exon 2 |
Splice Site |
c.219G>A |
p.Thr73Thr |
Pathogenic |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Exon 2 deletion confirmed by cDNA PCR and sequencing. |
130605378 |
Exon 2 |
Deletion |
c.214_215del |
p.Pro72Asnfs*76 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605380 |
Exon 2 |
Deletion |
c.212_219+6del |
p.Phe71Trpfs*75 |
Pathogenic |
2 |
Fontalba (2008) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605382 |
Exon 2 |
Deletion |
c.210del |
p.Glu70Aspfs*11 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605385 |
Exon 2 |
Silent |
c.207G>A |
p.Leu69Leu |
Benign |
19 |
Shovlin (1997) Lastella (2003) Lesca (2004) Lenato (2006) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T G C P F Co-segregation: mRNA study: Functional study: Comments: |
130605397 |
Exon 2 |
Duplication |
c.195dup |
p.Val66Cysfs*83 |
Pathogenic |
4 |
Lesca (2004) Schulte (2005) Lesca (2006) Yan(2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605413 |
Exon 2 |
Indel |
c.179_180delinsAA |
p.Ala60Glu |
Uncertain |
2 |
ARUP Laboratories |
 Clinical Features: E G F Co-segregation: mRNA study: Functional study: Comments: Originally reported as c.179-180CC>AA |
130605426 |
Exon 2 |
Nonsense |
c.166C>T |
p.Gln56* |
Pathogenic |
3 |
Bossler (2006) Argyriou(2006) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130605428 |
Exon 2 |
Deletion |
c.164del |
p.Ala55Valfs*26 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: |
130605433 |
Exon 2 |
Nonsense |
c.159C>A |
p.Cys53* |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605435 |
Exon 2 |
Missense |
c.157T>C |
p.Cys53Arg |
Pathogenic |
4 |
Gallione (1998) Pece-Barbara (1999) Cymerman (2000) Bayrak-Toydemir (2004) Karabegovic (2004) Bayrak-Toydemir (2006) ARUP Laboratories
|
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605435 |
Exon 2 |
Deletion |
c.157del |
p.Cys53Alafs*28 |
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605437 |
Exon 2 |
Missense |
c.155G>T |
p.Gly52Val |
Pathogenic |
1 |
Gallione (1998) Pece-Barbara (1999) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605437 |
Exon 2 |
Missense |
c.155G>A |
p.Gly52Asp |
Pathogenic |
3 |
Paquet (2001) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605438 |
Exon 2 |
Missense |
c.154G>C |
p.Gly52Arg |
Pending classification |
1 |
Wehner (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605446 |
Exon 2 |
Deletion |
c.146_152del |
p.Val49Glyfs*30 |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: 4 yo with P, E and F Co-segregation: mRNA study: Functional study: Comments: |
130605446 |
Exon 2 |
Indel |
c.144_146delinsAG |
p.Val49Aspfs*32 |
Pathogenic |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605447 |
Exon 2 |
Missense |
c.145G>T |
p.Val49Phe |
Pathogenic |
5 |
Lesca (2004) Olivieri (2007) ARUP Laboratories Nishida (2012) Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130605450 |
Exon 2 |
Nonsense |
c.142C>T |
p.Gln48* |
Pathogenic |
1 |
Letteboer (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605471 |
Exon 2 |
Missense |
c.121G>A |
p.Glu41Lys |
Pending classification |
2 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: 4/4 programmes predict non-pathogenic (PolyPhen2 score 0.006, SIFT predicts tolerated). Residue is a lysine in pig, horse and others on polyphen conservation table. Does improve a cryptic splice site, which has better score than the natural one. (Edinburgh) |
130605471 |
Exon 2 |
Nonsense |
c.121G>T |
p.Glu41* |
Pathogenic |
1 |
Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605472 |
Exon 2 |
Silent |
c.120C>T |
p.Gly40Gly |
Benign |
8 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: E T G H P F Co-segregation: mRNA study: Functional study: Comments: |
130605477 |
Exon 2 |
Deletion |
c.115del |
p.Arg39Glyfs*4 |
Pathogenic |
2 |
Cymerman (2003) ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130605481 |
Exon 2 |
Deletion |
c.111del |
p.Glu38Argfs*5 |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: T P Co-segregation: mRNA study: Functional study: Comments: |
130605485 |
Exon 2 |
Deletion |
c.107del |
p.Gly36Alafs*7 |
Pathogenic |
1 |
Schulte (2005) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605487 |
Exon 2 |
Duplication |
c.105_108dup |
p.Pro37Glyfs*12 |
Pathogenic |
|
Torring (2014) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605495 |
Exon 2 |
Nonsense |
c.97C>T |
p.Gln33* |
Pathogenic |
2 |
Lenato (2006) Olivieri (2007) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605496 |
Exon 2 |
Deletion |
c.96_102del |
p.Gln33Trpfs*8 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605497 |
Exon 2 |
Missense |
c.95T>G |
p.Leu32Arg |
Pending classification |
5 |
Paquet (2001) Lin (2000) Bossler (2006) Giordano (2006) Gedge (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605497 |
Exon 2 |
Missense |
c.95T>A |
p.Leu32His |
Pending classification |
2 |
Gedge (2007) ARUP Laboratories |
 Clinical Features: E T G F Co-segregation: mRNA study: Functional study: Comments: SIFT score 0.00 NOT tolerated |
130605502 |
Exon 2 |
Nonsense |
c.90T>A |
p.Cys30* |
Pathogenic |
1 |
Berg (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605515 |
Exon 2 |
Deletion |
c.77del |
p.Thr27Glnfs*16 |
Pathogenic |
1 |
Olivieri (2007) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605524 |
Exon 2 |
Splice Site |
c.68G>A |
p.Ser23Asn |
Pending classification |
3 |
Shovlin (1997) Fernandez (2005) Fernandez (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605524 |
Exon 2-10 |
Large Deletion |
EX2_10del |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Deletion Exon 2-10 |
130605524 |
Exon 2-9 |
Large Deletion |
Ex2_9del |
|
Pathogenic |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: c.68-?_?del |
130605524 |
Exon 2-8 |
Large Duplication |
EX2_8dup |
|
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E C Co-segregation: mRNA study: Functional study: Comments: Duplication Exon 2-8 |
130605524 |
Exon 2-4 |
Large Duplication |
EX2_4dup |
|
Pathogenic |
1 |
Prigoda (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Author published as: c.68_523dup p.G23_Q174dup |
130605525 |
Intron 1 |
Splice Site |
c.68-1G>A |
|
Pathogenic |
2 |
Lesca (2004) Bossler (2006) ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130605542 |
Intron 1 |
Intronic |
c.68-18C>A |
|
Pending classification |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616520 |
Intron 1 |
Intronic |
c.67+48G>A |
|
Pending classification |
1 |
Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616543 |
Intron 1 |
Intronic |
c.67+25G>T |
|
Pending classification |
2 |
Lastella (2003) Lenato (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616563 |
Intron 1 |
Splice Site |
c.67+5G>A |
|
Pending classification |
3 |
Prigoda (2006) Shovlin (1997) Cymerman (2003) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Proband's brother & father had PAVMs,Author published as: c.68_219del p.Ser23fs |
130616565 |
Intron 1 |
Splice Site |
c.67+3A>T |
|
Pending classification |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616566 |
Intron 1 |
Splice Site |
c.67+2T>G |
|
Pathogenic |
1 |
Nishida (2012) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616566 |
Intron 1 |
Splice Site |
c.67+2del |
|
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E T P Co-segregation: mRNA study: Functional study: Comments: |
130616567 |
Intron 1 |
Splice Site |
c.67+1G>A |
|
Pathogenic |
3 |
Gallione (2000) Letteboer (2005) Giordano (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616568 |
Exon 1 |
Deletion |
c.67del |
p.Ser23Valfs*20 |
Pathogenic |
2 |
ARUP Laboratories |
 Clinical Features: E Co-segregation: mRNA study: Functional study: Comments: |
130616572 |
Exon 1 |
Deletion |
c.63del |
p.Thr22Glnfs*21 |
Pathogenic |
4 |
Lastella (2003) Abdalla (2005) Lenato (2006) Giordano (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616594 |
Exon 1 |
Duplication |
c.41_51dup |
p.Ser18Trpfs*29 |
Pathogenic |
3 |
Gedge (2007) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: de novo mutation |
130616594 |
Exon 1 |
Missense |
c.41T>C |
p.Leu14Pro |
Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: |
130616600 |
Exon 1 |
Missense |
c.35T>C |
p.Leu12Pro |
Uncertain |
2 |
ARUP Laboratories |
 Clinical Features: E T Co-segregation: mRNA study: Functional study: Comments: |
130616603 |
Exon 1 |
Missense |
c.32C>A |
p.Ala11Asp |
Pending classification |
1 |
Bossler (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616610 |
Exon 1 |
Duplication |
c.24_34dup |
p.Leu12Argfs*35 |
Pathogenic |
2 |
Bayrak-Toydemir (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T P F Co-segregation: mRNA study: Functional study: Comments: Previously reported as c.34_35insGGCTGTTGCCC; p.L12fsX18 |
130616612 |
Exon 1 |
Missense |
c.23T>C |
p.Leu8Pro |
Pathogenic |
7 |
Lesca (2004) ARUP Laboratories McDonald (2009) |
 Clinical Features: E T P F Co-segregation: Affected father and sibling Affected nephew, symptomatic mother mRNA study: Functional study: Comments: |
130616621 |
Exon 1 |
Missense |
c.14C>T |
p.Thr5Met |
Benign |
10 |
Shovlin (1997) Lastella (2003) Abdalla (2005) Lenato (2006) ARUP Laboratories Fontalba (2008) |
 Clinical Features: E T G H P F Co-segregation: mRNA study: Functional study: Comments: |
130616624 |
Exon 1 |
Deletion |
c.11del |
p.Gly4Alafs*39 |
Pathogenic |
1 |
IMPACT Genetics |
 Clinical Features: affected by report Co-segregation: mRNA study: Functional study: Comments: |
130616628 |
Exon 1 |
Missense |
c.7C>T |
p.Arg3Cys |
Uncertain |
3 |
Submitted by Edinburgh Laboratories 2013 ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: Weakly conserved aa. High Grantham score 180. Polyphen2 possibly damaging with a score of 0.775, Align GVGD Class C65. (Edinburgh) |
130616632 |
Exon 1 |
Missense |
c.3G>A |
p.Met1? |
Suspected Pathogenic |
1 |
ARUP Laboratories |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616633 |
Exon 1 |
Missense |
c.2T>G |
p.Met1? |
Pathogenic |
4 |
Lesca (2004) Berg (2003) Lastres (1994) ARUP Laboratories |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: |
130616633 |
Exon 1 |
Missense |
c.2T>C |
p.Met1? |
Pathogenic |
4 |
Gallione (1998) Cymerman (2000) Bayrak-Toydemir (2006) Giordano (2006) |
 Clinical Features: Co-segregation: mRNA study: Functional study: Comments: |
130616634 |
Exon 1 |
Large Deletion |
EX1del |
|
Pathogenic |
3 |
ARUP Laboratories Submitted by Edinburgh Laboratories 2013 Lesca (2006) Bossler (2006) Argyriou (2008) |
 Clinical Features: P Co-segregation: mRNA study: Functional study: Comments: c.1_67del, c.-?_67+?del, c.-?_360+?del |
130616634 |
Exon 1 |
Missense |
c.1A>G |
p.Met1? |
Pathogenic |
3 |
Letteboer (2005) Lenato (2006) Gedge (2007) ARUP Laboratories |
 Clinical Features: E T F Co-segregation: mRNA study: Functional study: Comments: |
130616643 |
5'UTR |
Regulatory |
c.-9G>A |
|
Pathogenic-Mild |
7 |
Gedge (2007) ARUP Laboratories Damjanovich (2011) |
 Clinical Features: E T G F Co-segregation: One proband with 2 affected first degree relatives One proband with 1 affected second degree relative mRNA study: Functional study: Comments: (hypomorphic allele) |
130616644 |
5'UTR |
Regulatory |
c.-10C>T |
|
Pathogenic |
4 |
Bossler (2006) ARUP Laboratories Submitted by Edinburgh Laboratories 2013 |
 Clinical Features: P Co-segregation: mRNA study: Functional study: Comments: Reclassified as Pathogenic, January 2013. |
130616761 |
5'UTR |
Regulatory |
c.-127C>T |
|
Pathogenic |
6 |
Kim (2011) Damjanovich (2011) ARUP Laboratories |
 Clinical Features: Co-segregation: 5affecteds, 6affecteds/1unaffected, 1affected/2unaffected mRNA study: Functional study: Comments: |